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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC CORE OF RRP6 FROM TRYPANOSOMA BRUCEI
 
Authors :  R. L. Barbosa, B. G. Guimaraes
Date :  14 Nov 13  (Deposition) - 26 Mar 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  3'-5' Exoribonuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. L. Barbosa, P. Legrand, F. Wien, B. Pineau, A. Thompson, B. G. Guimaraes
Rrp6 From Trypanosoma Brucei: Crystal Structure Of The Catalytic Domain, Association With Eap3 And Activity Toward Structured And Non-Structured Rna Substrates
Plos One V. 9 89138 2014
PubMed-ID: 24558481  |  Reference-DOI: 10.1371/JOURNAL.PONE.0089138

(-) Compounds

Molecule 1 - RIBOSOMAL RNA PROCESSING PROTEIN 6
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 176-540
    Gene: TB927.4.1630
    Organism Scientific: TRYPANOSOMA BRUCEI BRUCEI
    Organism Taxid: 999953
    Strain: 927/4 GUTAT10.1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4NLB)

(-) Sites  (0, 0)

(no "Site" information available for 4NLB)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:496 -A:515

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:384 -Pro A:385

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NLB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NLB)

(-) Exons   (0, 0)

(no "Exon" information available for 4NLB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh.............eee.....eee.......hhhhhhhh..hhhhhh..............eeee.hhhhhhhhhhhhh...eeeeeeeee.......eeeeeeee....eeeee...hhhhhhhhhhhhh....eeee..hhhhhhhhhhhhh.....eeehhhhhhhh....hhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh...........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nlb A 176 SVLRPQLTFEHPVDNSPTPFRPVYYDEKGVRHVGEPGVHPFAERIKAVSVPSEQLLLKTETPYLSLVTCPLTFVDTVEDLEALVAVLLNETEIAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANMYLMAPVFLQPNIVKVFHGAREDVRWLQKDFGLYIVNLFDTSIALQNLHMPHSLAFAVDHFCQVKLNKKYQTADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLLLNCNMLLHVFQESRLLSLERYEKPHLDPDVTYKQALGRSLGGLSSSQLQVAREIFNWRDMAAREADDSPSAVMHISCVLSIATKLPTSANEVLKCCSPVSVAVRTNVMKLLQIVKDAIGSAL 541
                                   185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415|      432       442       452       462       472       482       492       502       512       522       532         
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                                                                                                                                                                                                                                                                          423
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NLB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NLB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NLB)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:384 - Pro A:385   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q581R8_TRYB2 | Q581R8: 4nlc

(-) Related Entries Specified in the PDB File

4nlc