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(-) Description

Title :  CRYSTAL STRUCTURE OF B. ANTHRACIS DHPS WITH COMPOUND 5: 4-[(TRIFLUOROMETHYL)SULFANYL]BENZAMIDE
 
Authors :  D. I. Hammoudeh, S. W. White
Date :  06 Nov 13  (Deposition) - 14 May 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Biol. Unit 3:  A (2x),B (2x)
Keywords :  Tim Barrel, Transferase, Pterin And Paba Binding, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. I. Hammoudeh, M. Date, M. K. Yun, W. Zhang, V. A. Boyd, A. Viacava Follis, E. Griffith, R. E. Lee, D. Bashford, S. W. White
Identification And Characterization Of An Allosteric Inhibitory Site On Dihydropteroate Synthase.
Acs Chem. Biol. V. 9 1294 2014
PubMed-ID: 24650357  |  Reference-DOI: 10.1021/CB500038G

(-) Compounds

Molecule 1 - DIHYDROPTEROATE SYNTHASE
    Chains: A, B
    EC Number: 2.5.1.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 5-280
    Gene: FOLP, BAS0071, BA_0071, GBAA_0071
    Organism Common: ANTHRAX, ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Strain: A2012

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B
Biological Unit 3 (2x): A (2x)B (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
12O82Ligand/Ion4-[(TRIFLUOROMETHYL)SULFANYL]BENZAMIDE
2SO411Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
12O82Ligand/Ion4-[(TRIFLUOROMETHYL)SULFANYL]BENZAMIDE
2SO410Ligand/IonSULFATE ION
Biological Unit 2 (2, 14)
No.NameCountTypeFull Name
12O82Ligand/Ion4-[(TRIFLUOROMETHYL)SULFANYL]BENZAMIDE
2SO412Ligand/IonSULFATE ION
Biological Unit 3 (2, 12)
No.NameCountTypeFull Name
12O82Ligand/Ion4-[(TRIFLUOROMETHYL)SULFANYL]BENZAMIDE
2SO410Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:25 , ASN A:27 , ARG A:68 , PRO A:69 , ARG A:254 , HIS A:256BINDING SITE FOR RESIDUE SO4 A 301
02AC2SOFTWARELYS A:50 , ARG A:53 , GLU A:93BINDING SITE FOR RESIDUE SO4 A 302
03AC3SOFTWARESER A:221 , ARG A:234BINDING SITE FOR RESIDUE SO4 A 303
04AC4SOFTWAREARG A:219BINDING SITE FOR RESIDUE SO4 A 304
05AC5SOFTWAREARG A:263BINDING SITE FOR RESIDUE SO4 A 305
06AC6SOFTWARELEU A:235 , GLU A:236 , MET A:264BINDING SITE FOR RESIDUE 2O8 A 306
07AC7SOFTWARELEU B:229 , ARG B:263BINDING SITE FOR RESIDUE SO4 B 301
08AC8SOFTWARESER B:221 , ARG B:234BINDING SITE FOR RESIDUE SO4 B 302
09AC9SOFTWARELYS B:50 , ARG B:53BINDING SITE FOR RESIDUE SO4 B 303
10BC1SOFTWAREASN B:27 , ARG B:219BINDING SITE FOR RESIDUE SO4 B 304
11BC2SOFTWAREARG B:201 , ASN B:202BINDING SITE FOR RESIDUE SO4 B 305
12BC3SOFTWAREILE B:25 , ARG B:254 , HIS B:256BINDING SITE FOR RESIDUE SO4 B 306
13BC4SOFTWARELEU B:235 , GLU B:236 , GLU B:260 , MET B:264BINDING SITE FOR RESIDUE 2O8 B 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NIL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:68 -Pro A:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NIL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NIL)

(-) Exons   (0, 0)

(no "Exon" information available for 4NIL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee......eeeeeee..........hhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh..eeee.......hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhh.hhh.eeee.......hhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nil A   1 MKWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 274
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270    


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee..eee......eeeee.........hhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh...eeee.......hhhhhhhhhhh..eeee.........hhhhhhhhhhhhhhhhhhhhh.hhh.eeee.......hhhhhhhhhhhhhhhhhhh...ee....hhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nil B   2 KWDYDLRCGEYTLNLNEKTLIMGILNVTPSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 274
                                    11        21        34        44        54        64|       81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271   
                                                       30|                            64|                                                                                                                                                                                                          
                                                        34                             72
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NIL)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q81VW8_BACAN | Q81VW8: 1tws 1tww 1twz 1tx0 1tx2 3h21 3h22 3h23 3h24 3h26 3h2a 3h2c 3h2e 3h2f 3h2m 3h2n 3h2o 3tya 3tyb 3tyc 3tyd 3tye 4d8a 4d8z 4d9p 4daf 4dai 4db7 4nhv 4nir 4nl1

(-) Related Entries Specified in the PDB File

4nhv 4nir 4nl1