Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF 5-CARBOXYVANILLATE DECARBOXYLASE LIGW FROM SPHINGOMONAS PAUCIMOBILIS COMPLEXED WITH MN AND 5-METHOXYISOPHTALIC ACID
 
Authors :  A. A. Fedorov, E. V. Fedorov, A. Vladimirova, F. M. Raushel, S. C. Almo
Date :  05 Nov 13  (Deposition) - 26 Nov 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.64
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,G  (1x)
Biol. Unit 3:  C,F  (1x)
Biol. Unit 4:  D,E  (1x)
Keywords :  Amidohydrolase Fold, 5-Carboxyvanillate Decarboxylase Ligw, 5- Methoxyisophtalic Acid, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. A. Fedorov, E. V. Fedorov, A. Vladimirova, F. M. Raushel, S. C. Almo
Crystal Structure Of 5-Carboxyvanillate Decarboxylase Ligw From Sphingomonas Paucimobilis Complexed With Mn And 5-Methoxyisophtalic Acid
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5-CARBOXYVANILLATE DECARBOXYLASE
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneLIGW
    Organism ScientificSPHINGOMONAS PAUCIMOBILIS
    Organism Taxid13689

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A      H
Biological Unit 2 (1x) B    G 
Biological Unit 3 (1x)  C  F  
Biological Unit 4 (1x)   DE   

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 36)

Asymmetric Unit (4, 36)
No.NameCountTypeFull Name
11WB8Ligand/Ion5-METHOXYBENZENE-1,3-DICARBOXYLIC ACID
2EDO18Ligand/Ion1,2-ETHANEDIOL
3GOL2Ligand/IonGLYCEROL
4MN8Ligand/IonMANGANESE (II) ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
11WB2Ligand/Ion5-METHOXYBENZENE-1,3-DICARBOXYLIC ACID
2EDO6Ligand/Ion1,2-ETHANEDIOL
3GOL-1Ligand/IonGLYCEROL
4MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
11WB2Ligand/Ion5-METHOXYBENZENE-1,3-DICARBOXYLIC ACID
2EDO4Ligand/Ion1,2-ETHANEDIOL
3GOL-1Ligand/IonGLYCEROL
4MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 3 (3, 10)
No.NameCountTypeFull Name
11WB2Ligand/Ion5-METHOXYBENZENE-1,3-DICARBOXYLIC ACID
2EDO7Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 4 (3, 4)
No.NameCountTypeFull Name
11WB2Ligand/Ion5-METHOXYBENZENE-1,3-DICARBOXYLIC ACID
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:7 , HIS A:173 , HIS A:226 , ASP A:296 , 1WB A:402 , HOH A:727 , HOH A:827BINDING SITE FOR RESIDUE MN A 401
02AC2SOFTWAREGLU A:7 , LEU A:34 , ARG A:45 , ALA A:77 , HIS A:173 , SER A:192 , ALA A:193 , TYR A:197 , HIS A:226 , ASP A:296 , TYR A:299 , MN A:401 , HOH A:558 , HOH A:563 , HOH A:612 , HOH A:613 , HOH A:648 , HOH A:827 , ARG H:237 , ASN H:244BINDING SITE FOR RESIDUE 1WB A 402
03AC3SOFTWARETYR A:240 , MET A:241 , GLY A:243 , ASN A:244 , HOH A:647BINDING SITE FOR RESIDUE EDO A 403
04AC4SOFTWARELEU A:254 , LYS A:255 , LEU A:256 , EDO A:405 , HOH A:564 , HOH A:625BINDING SITE FOR RESIDUE EDO A 404
05AC5SOFTWARELYS A:257 , GLU A:260 , EDO A:404 , HOH A:826 , PRO D:304BINDING SITE FOR RESIDUE EDO A 405
06AC6SOFTWAREARG A:45 , PRO A:46 , ALA A:47 , MET A:48BINDING SITE FOR RESIDUE EDO A 406
07AC7SOFTWAREGLU B:7 , HIS B:173 , HIS B:226 , ASP B:296 , 1WB B:402 , HOH B:737 , HOH B:834BINDING SITE FOR RESIDUE MN B 401
08AC8SOFTWAREGLU B:7 , LEU B:34 , ARG B:45 , ALA B:77 , HIS B:173 , SER B:192 , ALA B:193 , HIS B:226 , ASP B:296 , TYR B:299 , MN B:401 , HOH B:513 , HOH B:573 , HOH B:608 , HOH B:834 , ARG G:237 , ASN G:244 , HOH G:501BINDING SITE FOR RESIDUE 1WB B 402
09AC9SOFTWARETYR B:240 , MET B:241 , GLY B:243 , ASN B:244 , HOH B:585BINDING SITE FOR RESIDUE EDO B 403
10BC1SOFTWAREGLU C:7 , HIS C:173 , HIS C:226 , ASP C:296 , 1WB C:402 , HOH C:811 , HOH C:822BINDING SITE FOR RESIDUE MN C 401
11BC2SOFTWAREGLU C:7 , LEU C:34 , ARG C:45 , ALA C:77 , HIS C:173 , SER C:192 , ALA C:193 , TYR C:197 , HIS C:226 , ASP C:296 , TYR C:299 , MN C:401 , HOH C:583 , HOH C:592 , HOH C:604 , HOH C:663 , HOH C:822 , ARG F:237 , ASN F:244BINDING SITE FOR RESIDUE 1WB C 402
12BC3SOFTWAREPRO C:315 , HOH C:501 , HOH C:504 , HOH C:636 , HOH C:812 , HOH C:826 , PRO D:315 , HOH D:531BINDING SITE FOR RESIDUE EDO C 403
13BC4SOFTWARETYR C:240 , MET C:241 , GLY C:243 , ASN C:244 , HOH C:601BINDING SITE FOR RESIDUE EDO C 404
14BC5SOFTWAREARG C:45 , PRO C:46 , ALA C:47 , MET C:48 , ARG C:51 , HOH C:666BINDING SITE FOR RESIDUE EDO C 405
15BC6SOFTWAREGLU D:7 , HIS D:173 , HIS D:226 , ASP D:296 , 1WB D:402 , HOH D:747BINDING SITE FOR RESIDUE MN D 401
16BC7SOFTWAREGLU D:7 , LEU D:34 , ARG D:45 , ALA D:77 , HIS D:173 , ALA D:193 , TYR D:197 , HIS D:226 , ASP D:296 , TYR D:299 , MN D:401 , HOH D:544 , HOH D:551 , HOH D:556 , HOH D:581 , HOH D:593 , ARG E:237 , ASN E:244BINDING SITE FOR RESIDUE 1WB D 402
17BC8SOFTWARETYR D:240 , MET D:241 , GLY D:243 , ASN D:244 , HOH D:694BINDING SITE FOR RESIDUE EDO D 403
18BC9SOFTWAREGLU E:7 , HIS E:173 , HIS E:226 , ASP E:296 , 1WB E:402 , HOH E:834 , HOH E:846BINDING SITE FOR RESIDUE MN E 401
19CC1SOFTWAREARG D:237 , ASN D:244 , GLU E:7 , LEU E:34 , ARG E:45 , ALA E:77 , HIS E:173 , SER E:192 , ALA E:193 , TYR E:197 , HIS E:226 , ASP E:296 , TYR E:299 , MN E:401 , HOH E:583 , HOH E:588 , HOH E:596 , HOH E:603 , HOH E:622 , HOH E:846BINDING SITE FOR RESIDUE 1WB E 402
20CC2SOFTWARETYR E:240 , MET E:241 , GLY E:243 , ASN E:244 , HOH E:628BINDING SITE FOR RESIDUE GOL E 403
21CC3SOFTWAREGLU F:7 , HIS F:173 , HIS F:226 , ASP F:296 , 1WB F:402 , HOH F:817 , HOH F:821BINDING SITE FOR RESIDUE MN F 401
22CC4SOFTWAREARG C:237 , ASN C:244 , GLU F:7 , LEU F:34 , ARG F:45 , ALA F:77 , HIS F:173 , SER F:192 , ALA F:193 , TYR F:197 , HIS F:226 , ASP F:296 , TYR F:299 , MN F:401 , HOH F:570 , HOH F:576 , HOH F:614 , HOH F:623 , HOH F:639 , HOH F:821BINDING SITE FOR RESIDUE 1WB F 402
23CC5SOFTWAREASP F:152 , HIS F:157 , SER F:211 , GLY F:212 , ARG F:216 , HOH F:829BINDING SITE FOR RESIDUE GOL F 403
24CC6SOFTWARETYR F:240 , MET F:241 , GLY F:243 , ASN F:244 , HOH F:617BINDING SITE FOR RESIDUE EDO F 404
25CC7SOFTWAREGLU F:58 , GLU F:62 , SER F:65 , HOH F:605 , HOH F:649BINDING SITE FOR RESIDUE EDO F 405
26CC8SOFTWAREARG F:45 , PRO F:46 , ALA F:47 , MET F:48 , ARG F:51BINDING SITE FOR RESIDUE EDO F 406
27CC9SOFTWAREHIS F:276 , GLN F:307 , PHE F:308 , THR F:311 , HOH F:561 , HOH F:745 , ARG G:263BINDING SITE FOR RESIDUE EDO F 407
28DC1SOFTWAREGLU G:7 , HIS G:173 , HIS G:226 , ASP G:296 , 1WB G:402 , HOH G:733 , HOH G:823BINDING SITE FOR RESIDUE MN G 401
29DC2SOFTWAREARG B:237 , GLU G:7 , LEU G:34 , ARG G:45 , ALA G:77 , HIS G:173 , SER G:192 , ALA G:193 , TYR G:197 , HIS G:226 , ASP G:296 , TYR G:299 , MN G:401 , HOH G:530 , HOH G:566 , HOH G:592 , HOH G:608 , HOH G:823BINDING SITE FOR RESIDUE 1WB G 402
30DC3SOFTWARELEU G:1 , ARG G:310 , GLU G:316 , LYS G:319 , HOH G:773 , HOH G:821 , PRO H:288 , GLU H:289 , MET H:321BINDING SITE FOR RESIDUE EDO G 403
31DC4SOFTWAREGLU G:58 , GLU G:62 , HOH G:822 , HOH G:824 , PRO H:218BINDING SITE FOR RESIDUE EDO G 404
32DC5SOFTWARETYR G:240 , MET G:241 , GLY G:243 , ASN G:244 , HOH G:604BINDING SITE FOR RESIDUE EDO G 405
33DC6SOFTWAREGLU H:7 , HIS H:173 , HIS H:226 , ASP H:296 , 1WB H:402 , HOH H:820 , HOH H:821BINDING SITE FOR RESIDUE MN H 401
34DC7SOFTWAREARG A:237 , ASN A:244 , GLU H:7 , LEU H:34 , ARG H:45 , ALA H:77 , HIS H:173 , SER H:192 , ALA H:193 , TYR H:197 , HIS H:226 , ASP H:296 , TYR H:299 , MN H:401 , HOH H:531 , HOH H:574 , HOH H:597 , HOH H:662 , HOH H:821BINDING SITE FOR RESIDUE 1WB H 402
35DC8SOFTWARESER G:0 , ARG G:310 , GLU H:289 , ARG H:329 , HOH H:631BINDING SITE FOR RESIDUE EDO H 403
36DC9SOFTWAREARG H:45 , PRO H:46 , ALA H:47 , MET H:48 , ARG H:51BINDING SITE FOR RESIDUE EDO H 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NI8)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Ala A:77 -Pro A:78
2Tyr A:297 -Pro A:298
3Ala B:77 -Pro B:78
4Tyr B:297 -Pro B:298
5Ala C:77 -Pro C:78
6Tyr C:297 -Pro C:298
7Ala D:77 -Pro D:78
8Tyr D:297 -Pro D:298
9Ala E:77 -Pro E:78
10Tyr E:297 -Pro E:298
11Ala F:77 -Pro F:78
12Tyr F:297 -Pro F:298
13Ala G:77 -Pro G:78
14Tyr G:297 -Pro G:298
15Ala H:77 -Pro H:78
16Tyr H:297 -Pro H:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NI8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NI8)

(-) Exons   (0, 0)

(no "Exon" information available for 4NI8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 A   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain B from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 B   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain C from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 C   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain D from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 D   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain E from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 E   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain F from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 F   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain G from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 G   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

Chain H from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhh.......hhhhhhhhhh......hhhhhhhh..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhh..eeee.......hhhhhh........hhhhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhheeee.....hhhhhhhhhhhhh...ee........hhhhhhhhhhh...hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ni8 H   0 SLRLIATEEAVTFQPVVDALRAHSRTDDASLDMILVRDVYGDEPARPAMIGRLSDVTGERLAEMDSNGVDMHLLSLTAPGVQMFDAETGTRLARIANDLMAQTVAANPTRFAGLGTFAPQDPASAAREIERVATQLRLNGLVINSHTNDLYYDDPFFHPVFEAIEASGLALYIHPRAPSKQIDRAFRDYGMNSAIWGYGIETSTNAVRMILSGLFDRFPRLKIVLGHMGEAIPFWLWRLDYMHGNATTFGGAPKLKLKPSEYFRRNFAITTSGVESHAALRYSIEVLGPENVMWAIDYPYQPMAPAVQFIRTAPIPEDVKAMVAGGNAARIFRIT 334
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NI8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NI8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NI8)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    1WB  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    EDO  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    GOL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:77 - Pro A:78   [ RasMol ]  
    Ala B:77 - Pro B:78   [ RasMol ]  
    Ala C:77 - Pro C:78   [ RasMol ]  
    Ala D:77 - Pro D:78   [ RasMol ]  
    Ala E:77 - Pro E:78   [ RasMol ]  
    Ala F:77 - Pro F:78   [ RasMol ]  
    Ala G:77 - Pro G:78   [ RasMol ]  
    Ala H:77 - Pro H:78   [ RasMol ]  
    Tyr A:297 - Pro A:298   [ RasMol ]  
    Tyr B:297 - Pro B:298   [ RasMol ]  
    Tyr C:297 - Pro C:298   [ RasMol ]  
    Tyr D:297 - Pro D:298   [ RasMol ]  
    Tyr E:297 - Pro E:298   [ RasMol ]  
    Tyr F:297 - Pro F:298   [ RasMol ]  
    Tyr G:297 - Pro G:298   [ RasMol ]  
    Tyr H:297 - Pro H:298   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4ni8
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q8RJ47_SPHPI | Q8RJ47
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  Q8RJ47_SPHPI | Q8RJ47
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8RJ47_SPHPI | Q8RJ474l6d 4ng3

(-) Related Entries Specified in the PDB File

4icm THE SAME PROTEIN UNCOMPLEXED