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(-) Description

Title :  CRYSTAL STRUCTURE OF THE GH5 FAMILY CATALYTIC DOMAIN OF ENDO-1,4-BETA-GLUCANASE CEL5C FROM BUTYRIVIBRIO PROTEOCLASTICUS.
 
Authors :  J. S. Lott, D. A. Colbert
Date :  30 Oct 13  (Deposition) - 05 Nov 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha/Beta Tim Barrel, Glycosyl Hydrolase, Polysaccharide Binding, Secreted, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Lott, D. A. Colbert
Structural And Functional Characterisation Of Endo-1, 4-Beta-Glucanase Cel5C From Bovine Rumen Microbe Butyrivibrio Proteoclasticus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-GLUCANASE CEL5C
    Chains: A
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST566
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CATALYTIC DOMAIN, UNP RESIDUES 32-394
    Gene: BPR_I1710, CEL5C
    Organism Scientific: BUTYRIVIBRIO PROTEOCLASTICUS
    Organism Taxid: 515622
    Strain: ATCC 51982 / DSM 14932 / B316

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4NF7)

(-) Sites  (0, 0)

(no "Site" information available for 4NF7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NF7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:65 -Pro A:66
2Ile A:276 -Pro A:277

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NF7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NF7)

(-) Exons   (0, 0)

(no "Exon" information available for 4NF7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh.eeee.........hhhhh...............hhhhhhhhhhh...eeee...hhhhh.......hhhhhhhhhhhhhhhhh...eeeee..............hhhhhhhhhhhhhhhhhhhhhhh......eeee.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhh.............eeeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh....eeeee.............................hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nf7 A  32 GAGTDRSATQVVSDMRVGWNIGNSLDSFGQSYNFPYTSLNETYWGNPATTKALIDEVAKAGFNTIRIPVSWGQYTSGSDYQIPDFVMNRVKEVVDYCIVNDMYVILNSHHDINSDYCFYVPNNANKDRSEKYFKSIWTQIAKEFRNYDYHLVFETMNEPRLVGHGEEWWFPRNNPSNDIREAVACINDYNQVALDAIRATGGNNATRCVMVPGYDASIEGCMTDGFKMPNDTASGRLILSVHAYIPYYFALASDTYVTRFDDNLKYDIDSFFNDLNSKFLSRNIPVVVGETSATNRNNTAERVKWADYYWGRAARYSNVAMVLWDNNIYQNNSAGSDGECHMYIDRNSLQWKDPEIISTIMKH 394
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NF7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NF7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NF7)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ile A:276 - Pro A:277   [ RasMol ]  
    Phe A:65 - Pro A:66   [ RasMol ]  
 

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