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(-) Description

Title :  CRYSTAL STRUCTURE OF ANABOLIC ORNITHINE CARBAMOYLTRANSFERASE FROM BACILLUS ANTHRACIS IN COMPLEX WITH CARBAMOYL PHOSPHATE AND L-NORVALINE
 
Authors :  I. G. Shabalin, K. Handing, M. T. Cymborowski, J. Stam, J. Winsor, L. Shu W. F. Anderson, W. Minor, Center For Structural Genomics Of Infe Diseases (Csgid)
Date :  30 Oct 13  (Deposition) - 13 Nov 13  (Release) - 13 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.74
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Carbamoyl Phosphate, L-Ornithine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. G. Shabalin, K. Handing, M. T. Cymborowski, J. Stam, J. Winsor, L. Shuvalova, W. F. Anderson, W. Minor
Crystal Structures And Kinetic Properties Of Anabolic Ornithine Carbamoyltransferase From Human Pathogens Vibrio Vulnificus And Bacillus Anthracis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ORNITHINE CARBAMOYLTRANSFERASE
    Chains: A, B, C
    EC Number: 2.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ARGF, BAS4036, BA_4351, GBAA_4351
    Mutation: YES
    Organism Common: ANTHRAX, ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 261594
    Strain: AMES ANCESTOR
    Synonym: OTCASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2CP3Ligand/IonPHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3NVA3Ligand/IonNORVALINE

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:57 , THR A:58 , ARG A:59 , THR A:60 , ARG A:108 , HIS A:135 , GLN A:138 , CYS A:269 , LEU A:270 , ARG A:297 , NVA A:402 , GLN B:84BINDING SITE FOR RESIDUE CP A 401
02AC2SOFTWAREASN A:165 , ASN A:166 , ASP A:230 , SER A:234 , MET A:235 , LEU A:270 , CP A:401 , HOH A:513 , HOH A:601BINDING SITE FOR RESIDUE NVA A 402
03AC3SOFTWAREILE A:289 , VAL A:290 , PHE A:291 , GLU A:292BINDING SITE FOR RESIDUE CL A 403
04AC4SOFTWARESER A:234 , GLY A:236 , HOH A:513 , HOH A:540BINDING SITE FOR RESIDUE CL A 404
05AC5SOFTWAREILE B:289 , PHE B:291 , GLU B:292 , HOH B:619BINDING SITE FOR RESIDUE CL B 401
06AC6SOFTWARELEU B:130 , ASN B:165 , ASN B:166 , ASP B:230 , SER B:234 , MET B:235 , LEU B:270 , CP B:403 , HOH B:645 , HOH B:666BINDING SITE FOR RESIDUE NVA B 402
07AC7SOFTWARESER B:57 , THR B:58 , ARG B:59 , THR B:60 , ARG B:108 , HIS B:135 , GLN B:138 , CYS B:269 , LEU B:270 , ARG B:297 , NVA B:402 , GLN C:84BINDING SITE FOR RESIDUE CP B 403
08AC8SOFTWARESER B:234 , GLY B:236 , HOH B:666 , HOH B:667BINDING SITE FOR RESIDUE CL B 404
09AC9SOFTWAREGLN A:84 , SER C:57 , THR C:58 , ARG C:59 , THR C:60 , ARG C:108 , HIS C:135 , GLN C:138 , CYS C:269 , LEU C:270 , ARG C:297 , NVA C:402BINDING SITE FOR RESIDUE CP C 401
10BC1SOFTWAREHOH A:520 , LEU C:130 , ASN C:165 , ASN C:166 , ASP C:230 , SER C:234 , MET C:235 , LEU C:270 , CP C:401 , HOH C:517BINDING SITE FOR RESIDUE NVA C 402
11BC2SOFTWAREHOH A:689 , ILE C:289 , PHE C:291 , GLU C:292 , HOH C:632BINDING SITE FOR RESIDUE CL C 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NF2)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Leu A:270 -Pro A:271
2Leu B:270 -Pro B:271
3Leu C:270 -Pro C:271

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NF2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NF2)

(-) Exons   (0, 0)

(no "Exon" information available for 4NF2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4nf2a1 A:5-151 automated matches                                                                                                                  d4nf2a2 A:152-311 automated matches                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhh....eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee..........hhhhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nf2 A   5 QVPKLNTKDLLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKN 311
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       


Chain B from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4nf2b1 B:5-151 automated matches                                                                                                                  d4nf2b2 B:152-311 automated matches                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhh....eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee...........hhhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nf2 B   5 QVPKLNTKDLLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKN 311
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       


Chain C from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4nf2c1 C:5-151 automated matches                                                                                                                  d4nf2c2 C:152-311 automated matches                                                                                                                              SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................hhhhhhhhhhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhh.hhhhhhhhhh....eeeee..hhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhh.eeeee.......hhhhhhhhhhhhhhhh..eeee.hhhhhhh...eeee....hhhhh...hhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nf2 C   5 QVPKLNTKDLLTLEELTQEEIISLIEFAIYLKKNKQEPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKN 311
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NF2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NF2)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        OTC_BACAN | Q81M99: 4ep1

(-) Related Entries Specified in the PDB File

4ep1 APO-FORM RELATED ID: CSGID-IDP02525 RELATED DB: TARGETTRACK