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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSIS RAD50 R805E MUTATION
 
Authors :  S. Classen, G. J. Williams, A. S. Arvai, R. S. Williams
Date :  24 Oct 13  (Deposition) - 05 Mar 14  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Adenosine Triphosphatase, Dna Repair, Dna Binding Protein, Fungal Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. A. Deshpande, G. J. Williams, O. Limbo, R. S. Williams, J. Kuhnlein, J. H. Lee, S. Classen, G. Guenther, P. Russell, J. A. Tainer, T. T. Paull
Atp-Driven Rad50 Conformations Regulate Dna Tethering, End Resection, And Atm Checkpoint Signaling.
Embo J. V. 33 482 2014
PubMed-ID: 24493214  |  Reference-DOI: 10.1002/EMBJ.201386100

(-) Compounds

Molecule 1 - DNA DOUBLE-STRAND BREAK REPAIR RAD50 ATPASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 1-177 AND 726-882
    Gene: PF1167, RAD50
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4NCI)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NCI)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Trp A:49 -Pro A:50
2Tyr A:92 -Ser A:93

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NCI)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.......eeee...eeeeee.....hhhhhhhhhhhhhhh............eeeeeeee....eeeeeeee.......eeeeeeeee..eeee....hhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee..eeeeeeee..eeee.hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhh.eeeeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nci A   1 MKLERVTVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDRDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFELAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVVS 882
                                    10        20        30        40        50        67        77        87        97       107       117       127       137       147       157       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881 
                                                                                     59|                                                                                               165|                                                                                                                                                        
                                                                                      67                                                                                                730
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NCI)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (11, 11)

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  Cis Peptide Bonds
    Trp A:49 - Pro A:50   [ RasMol ]  
    Tyr A:92 - Ser A:93   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RAD50_PYRFU | P58301: 1f2t 1f2u 1ii8 1l8d 1us8 3qkr 3qks 3qkt 3qku 4nch 4ncj 4nck

(-) Related Entries Specified in the PDB File

4nch 4ncj 4nck