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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE PPUT_1760 FROM PSEUDOMONAS PUTIDA, TARGET EFI-507288, WITH ONE GLUTATHIONE DISULFIDE BOUND PER ONE PROTEIN SUBUNIT
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, N. Al M. Stead, J. Love, J. A. Gerlt, R. N. Armstrong, S. C. Almo, Enzyme Func Initiative (Efi)
Date :  22 Oct 13  (Deposition) - 06 Nov 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione S-Transferase, Enzyme Function Initiative, Efi, Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, N. Al Obaidi, M. Stead, J. Love, J. A. Gerlt, R. N. Armstrong, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of Glutathione Transferase Pput_1760 From Pseudomonas Putida, Target Efi-507288
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE, N-TERMINAL DOMAIN PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PPUT_1760
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 351746
    Strain: F1 / ATCC 700007

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1FMT1Ligand/IonFORMIC ACID
2GDS2Ligand/IonOXIDIZED GLUTATHIONE DISULFIDE
3GOL3Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:28 , ASN A:30 , PHE A:52 , GLN A:57 , LYS A:70 , ILE A:71 , PRO A:72 , GLU A:89 , SER A:90 , MET A:123 , GLY A:127 , PRO A:128 , GLY A:131 , TRP A:188 , GOL A:302 , HOH A:402 , HOH A:410 , HOH A:414 , HOH A:439 , HOH A:492 , HOH A:493 , HOH A:515 , HOH A:546 , ARG B:152BINDING SITE FOR RESIDUE GDS A 301
2AC2SOFTWAREASN A:68 , LYS A:70 , GLU A:89 , GDS A:301 , HOH A:439 , GLY B:124 , GLY B:125 , GLU B:156 , ARG B:159 , HOH B:445BINDING SITE FOR RESIDUE GOL A 302
3AC3SOFTWAREPHE A:136 , HIS A:137 , LYS A:147 , ARG A:150 , HOH A:593BINDING SITE FOR RESIDUE FMT A 303
4AC4SOFTWAREARG A:152 , THR B:28 , ASN B:30 , PHE B:52 , GLN B:57 , LYS B:70 , ILE B:71 , PRO B:72 , GLU B:89 , SER B:90 , MET B:123 , GLY B:127 , PRO B:128 , GLY B:131 , TRP B:188 , GOL B:302 , HOH B:404 , HOH B:410 , HOH B:418 , HOH B:455 , HOH B:456 , HOH B:488 , HOH B:518 , HOH B:561BINDING SITE FOR RESIDUE GDS B 301
5AC5SOFTWAREGLY A:124 , GLY A:125 , ARG A:159 , HOH A:436 , ASN B:68 , LYS B:70 , GLU B:89 , GDS B:301 , HOH B:456BINDING SITE FOR RESIDUE GOL B 302
6AC6SOFTWAREARG A:159 , LEU B:58 , ILE B:63 , ASN B:69 , ARG B:150 , ASP B:151 , HOH B:476 , HOH B:562 , HOH B:591 , HOH B:593 , HOH B:652BINDING SITE FOR RESIDUE GOL B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAX)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:71 -Pro A:72
2Ile A:229 -Pro A:230
3Ile B:71 -Pro B:72
4Ile B:229 -Pro B:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAX)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains d4naxa1 A:3-103 automated matches                                                                    d4naxa2 A:104-239 automated matches                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh.......eeeee....hhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh......eeee..hhhhh.eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nax A   3 ELSAFPITRKWPAKHPERLQLYSLPTPNGVKVSIMLEEIGLAYEAHKVSFDNDDQLSPEFISLSANNKIPAILDPNGPGGQPLPLFESGAILQYLAEKSGQLLSQDPAQRYQTLQWLMFQMGGIGPMFGQVGFFHFFAGKEYEDKRPRDRYVNESKRLLGVLDRHLKGRQWMAEEYSIADIAIFPWVRNLVERYNARDLVGFDQFKEVQRVLANFLERPAVQHGLKIPGAENLYFQG 239
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       


Chain B from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains d4naxb1 B:2-103 automated matches                                                                     d4naxb2 B:104-231 automated matches                                                                                              SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhh........eeee..hhhhh.eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nax B   2 TELSAFPITRKWPAKHPERLQLYSLPTPNGVKVSIMLEEIGLAYEAHKVSFDNDDQLSPEFISLSANNKIPAILDPNGPGGQPLPLFESGAILQYLAEKSGQLLSQDPAQRYQTLQWLMFQMGGIGPMFGQVGFFHFFAGKEYEDKRPRDRYVNESKRLLGVLDRHLKGRQWMAEEYSIADIAIFPWVRNLVERYNARDLVGFDQFKEVQRVLANFLERPAVQHGLKIPG 231
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAX)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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