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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN ATG12~ATG5-ATG16N IN COMPLEX WITH A FRAGMENT OF ATG3
 
Authors :  Z. Metlagel, C. Otomo, G. Takaesu, T. Otomo
Date :  22 Oct 13  (Deposition) - 06 Nov 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Protein-Protein Conjugate, Ubiquitin-Like Protein, Autophagy, E3 Ligase, Protein Transport-Ligase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Metlagel, C. Otomo, G. Takaesu, T. Otomo
Structural Basis Of Atg3 Recognition By The Autophagic Ubiquitin-Like Protein Atg12.
Proc. Natl. Acad. Sci. Usa V. 110 18844 2013
PubMed-ID: 24191030  |  Reference-DOI: 10.1073/PNAS.1314755110

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE PROTEIN ATG12
    Chains: A, E, I, M
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYC DUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 52-140
    Gene: APG12, APG12L, ATG12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AUTOPHAGY-RELATED PROTEIN 12, APG12-LIKE
 
Molecule 2 - AUTOPHAGY PROTEIN 5
    Chains: B, F, J, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYC DUET-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: APG5L, ASP, ATG5
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APG5-LIKE, APOPTOSIS-SPECIFIC PROTEIN
 
Molecule 3 - AUTOPHAGY-RELATED PROTEIN 16-1
    Chains: C, G, K, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 11-43
    Gene: APG16L, ATG16L1, UNQ9393/PRO34307
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APG16-LIKE 1
 
Molecule 4 - UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
    Chains: D, H, L, P
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 140-170
    Gene: APG3, APG3L, ATG3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AUTOPHAGY-RELATED PROTEIN 3, APG3-LIKE, HAPG3, PROTEIN PC3- 96

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCD            
Biological Unit 2 (1x):     EFGH        
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1NA4Ligand/IonSODIUM ION
2SO411Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO42Ligand/IonSULFATE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO44Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO43Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG B:183 , ARG B:204 , ALA F:207 , ALA F:208 , ASP F:209BINDING SITE FOR RESIDUE SO4 B 301
02AC2SOFTWAREARG B:161 , PHE B:162 , ASP B:163 , GLN B:164 , HOH B:414 , HOH B:470 , HOH B:516 , ARG J:30BINDING SITE FOR RESIDUE SO4 B 302
03AC3SOFTWAREALA B:95 , PRO B:97 , ASN B:99 , HOH B:405 , HOH B:413 , HOH J:410BINDING SITE FOR RESIDUE NA B 303
04AC4SOFTWAREGLN C:30 , SER F:94 , ALA F:95 , HOH F:407BINDING SITE FOR RESIDUE SO4 F 301
05AC5SOFTWARELYS F:138 , ARG F:183 , ARG F:204BINDING SITE FOR RESIDUE SO4 F 302
06AC6SOFTWAREALA F:95 , PRO F:97 , ASN F:99 , HOH F:401 , HOH F:407 , HOH F:412BINDING SITE FOR RESIDUE NA F 303
07AC7SOFTWARESER B:94 , ALA B:95 , GLN G:30 , ARG J:161 , HOH J:410BINDING SITE FOR RESIDUE SO4 J 301
08AC8SOFTWARESER J:94 , ALA J:95 , GLN O:30BINDING SITE FOR RESIDUE SO4 J 302
09AC9SOFTWARELYS J:138 , ARG J:183 , ARG J:204BINDING SITE FOR RESIDUE SO4 J 303
10BC1SOFTWAREARG J:161 , PHE J:162 , ASP J:163 , GLN J:164 , HOH J:509BINDING SITE FOR RESIDUE SO4 J 304
11BC2SOFTWAREALA J:95 , PRO J:97 , ASN J:99 , HOH J:514BINDING SITE FOR RESIDUE NA J 305
12BC3SOFTWARESER B:117 , LYS B:118 , LYS N:51 , HOH N:427 , HOH N:428 , HOH N:450BINDING SITE FOR RESIDUE SO4 N 301
13BC4SOFTWAREARG N:183 , ARG N:204BINDING SITE FOR RESIDUE SO4 N 302
14BC5SOFTWAREARG N:161 , ASP N:163 , GLN N:164 , HOH N:424BINDING SITE FOR RESIDUE SO4 N 303
15BC6SOFTWAREALA N:95 , PRO N:97 , ASN N:99 , HOH N:405BINDING SITE FOR RESIDUE NA N 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAW)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu B:96 -Pro B:97
2Leu F:96 -Pro F:97
3Leu J:96 -Pro J:97
4Leu N:96 -Pro N:97

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAW)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains d4nawa_ A: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..........eeee....hhhhhhhhhhhhh........eeee..........hhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 4naw A  53 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
                                    62        72        82        92       102       112       122       132        


Chain B from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.eeeeeeee............eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeee..ee.....hhhhhhhhhh......eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.............eeee.......................hhhhhhhhhh.....eeee..........hhhhhhhhh......eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4naw B   2 TDDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQPT 274
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221     ||238       248       258       268      
                                                                                                                                                                                                                                                           227|                                       
                                                                                                                                                                                                                                                            235                                       


Chain C from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 4naw C  10 MPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL  43
                                    19        29        39    


Chain D from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..eehhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4naw D 153 EAADMEEYEESGL 165
                                   162   


Chain E from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains d4nawe_ E: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..........eeee....hhhhhhhhhhhhh........eeee..........hhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 4naw E  53 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
                                    62        72        82        92       102       112       122       132        


Chain F from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeeeeee............eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeee..ee.....hhhhhhhhhh......eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhh.............eeee.......................hhhhhhhhhh......eeee..........hhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4naw F   3 DDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQP 273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     ||238       248       258       268     
                                                                                                                                                                                                                                                           228|                                      
                                                                                                                                                                                                                                                            235                                      


Chain G from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 4naw G  10 MPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL  43
                                    19        29        39    


Chain H from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .eehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4naw H 154 AADMEEYEESGL 165
                                   163  


Chain I from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains d4nawi_ I: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..........eeee....hhhhhhhhhhhhh........eeee..........hhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 4naw I  53 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
                                    62        72        82        92       102       112       122       132        


Chain J from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeeeeee............eeeeee...hhhhhhhhhhhhhhh..........eeee..ee.....hhhhhhhhhh......eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.............eeee.......................hhhhhhhhhhhhhh..eeee..........hhhhhhhhh......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4naw J   4 DKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIDKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQ 272
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223    || 239       249       259       269   
                                                                                                                                                                                                                                                          228|                                     
                                                                                                                                                                                                                                                           235                                     


Chain K from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 4naw K  10 MPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL  43
                                    19        29        39    


Chain L from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .eehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4naw L 154 AADMEEYEESGL 165
                                   163  


Chain M from PDB  Type:PROTEIN  Length:88
                                                                                                                        
               SCOP domains d4nawm_ M: automated matches                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..........eeee....hhhhhhhhhhhhh........eeee..........hhhhhhhhhh...eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 4naw M  53 KKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVLHYCKSQAWG 140
                                    62        72        82        92       102       112       122       132        


Chain N from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeeeeee............eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeee..ee.....hhhhhhhhhh......eeeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhh.............eeeee......................hhhhhhhhhhhhhh.eeee..........hhhhhhhhh......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4naw N   3 DDKDVLRDVWFGRIPTCFTLYQDEITEREAEPYYLLLPRVSYLTLVTDKVKKHFQKVMRQEDISEIWFEYEGTPLKWHYPIGLLFDLLASSSALPWNITVHFKSFPEKDLLHCPSKDAIEAHFMSCMKEADALKHKSQVINEMQKKDHKQLWMGLQNDRFDQFWAINRKLMEYPAEENGFRYIPFRIYQTTTERPFIQKLFRPVAADGQLHTLGDLLKEVCPSAIKNQVMIHGIEPMLETPLQWLSEHLSYPDNFLHISIIPQP 273
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    || 239       249       259       269    
                                                                                                                                                                                                                                                          227|                                      
                                                                                                                                                                                                                                                           235                                      


Chain O from PDB  Type:PROTEIN  Length:34
                                                                  
               SCOP domains ---------------------------------- SCOP domains
               CATH domains ---------------------------------- CATH domains
               Pfam domains ---------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------- PROSITE
                 Transcript ---------------------------------- Transcript
                 4naw O  10 MPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLL  43
                                    19        29        39    


Chain P from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ..eehhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4naw P 153 EAADMEEYEESGL 165
                                   162
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAW)

(-) Gene Ontology  (62, 102)

Asymmetric Unit(hide GO term definitions)

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  4naw
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  A16L1_HUMAN | Q676U5
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  ATG12_HUMAN | O94817
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  ATG3_HUMAN | Q9NT62
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    Protein-protein Interaction: DIP
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  ATG5_HUMAN | Q9H1Y0
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  A16L1_HUMAN | Q676U5
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  ATG12_HUMAN | O94817
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A16L1_HUMAN | Q676U5: 4gdk 4gdl 4tq0 5d7g
        ATG12_HUMAN | O94817: 4gdk 4gdl
        ATG5_HUMAN | Q9H1Y0: 4gdk 4gdl 4tq0 4tq1 5d7g

(-) Related Entries Specified in the PDB File

4gdk A CRYSTAL STRUCTURE OF THE ATG12~ATG5-ATG16N COMPLEX WITHOUT ATG3
4gdl A CRYSTAL STRUCTURE OF THE ATG12~ATG5-ATG16N COMPLEX WITHOUT ATG3