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(-) Description

Title :  CRYSTAL STRUCTURE OF THE Q9WYS3 PROTEIN FROM THERMOTOGA MARITIMA. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET VR152
 
Authors :  S. Vorobiev, S. Lew, J. Seetharaman, Y. Chi, R. Xiao, M. Maglaqui, D. Lee J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northe Structural Genomics Consortium (Nesg)
Date :  22 Oct 13  (Deposition) - 06 Nov 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Vr152, Pf09861, Duf2088, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, S. Lew, J. Seetharaman, Y. Chi, R. Xiao, M. Maglaqui, D. Lee, J. K. Everett, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Crystal Structure Of The Q9Wys3 Protein From Thermotoga Maritima.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE URONATE ISOMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 469008
    Gene: TMARI_0439, TM_0442
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Strain: ATCC 43589/MSB8/DSM 3109/JCM 10099

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 13)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MSE9Mod. Amino AcidSELENOMETHIONINE
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE
3SO46Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:71 , THR A:72 , PRO A:168 , HIS A:180 , TRP A:283 , ASN A:348 , HOH A:707 , HOH A:734 , HOH A:805 , HOH A:835BINDING SITE FOR RESIDUE SO4 A 501
2AC2SOFTWAREARG A:41 , HIS A:73 , HIS A:154 , LYS A:164 , LYS A:287 , HOH A:805 , HOH A:818BINDING SITE FOR RESIDUE SO4 A 502
3AC3SOFTWARELYS A:341 , HIS A:342 , HOH A:773BINDING SITE FOR RESIDUE SO4 A 503
4AC4SOFTWAREARG A:41 , ASN A:149 , GLY A:150 , SER A:160 , GLY A:161 , LYS A:164BINDING SITE FOR RESIDUE ACT A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAR)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Asp A:8 -Pro A:9
2Ile A:167 -Pro A:168
3Val A:413 -Pro A:414

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAR)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:420
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee....hhhhhhhhhhhhhhh.....eeeeee.......hhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhh.......eeee.....hhh.eeeeeeehhhhhhhhh.......eeeeee.hhhh...eeeeeee..ee...ee.hhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..eeeeeeeeeee...eeeeeeeeeehhhhhhhhhhhhhhhhhhhheeee...eeeeeee......hhhhhhhhhhh......eeeeeeeeeee........hhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhhhhh.eee......eee.eeeeeee..hhhhhhhh..ee.hhhhhhhhhhh...eeee......eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nar A   4 YLEGDPLTEEKIKEGLSKLVEDLGKVKKVLVVHTDYTRVDFTHLVAKNLYRFLLERGLKEFHTLNASGTHRTmKIEEFEKKLGISRNERRVFFHNHEFFNPEALAFVGTLPAGFVSEmTEGDLEEEIPIKVNRLLFEDFDAIFFINGTVPHESTGFSGGLKIVIPGIASTEVVDTFHWAAVLmGIPKLIGTVDNPARKIINRASEmIFEKIKARSFTLNmVYEEEEEVIPRALYIDEGYEGFLRAYEKACELSSQLHVKYIDRPLRRAVQVIGEEYDEVWTAGKGSYKLQRPGVmAKGGQIIIYAPHIKRFHSNPQmDKWIREIGYHCKDYVKWYLKKHPDFNKNVAAHVINVRGAGTFDPETGKEEFEFDVILATSIPEDECRAVNLGYmDPSKIKKEDFmDEDSLWIVPGGKYLYDLK 423
                                    13        23        33        43        53        63        73  |     83        93       103       113       123       133       143       153       163       173       183  |    193       203     | 213       223       233       243       253       263       273       283       293    |  303       313      |323       333       343       353       363       373       383       393|      403 |     413       423
                                                                                                   76-MSE                                      121-MSE                                                          186-MSE                209-MSE       223-MSE                                                                    298-MSE               320-MSE                                                                   394-MSE    405-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NAR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAR)

(-) Gene Ontology  (1, 1)

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  4nar
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  Q9WYS3_THEMA | Q9WYS3
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 Related Entries

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