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(-) Description

Title :  PCRB FROM GEOBACILLUS KAUSTOPHILUS, WITH BOUND G1P
 
Authors :  D. Peterhoff, B. Beer, C. Rajendran, E. P. Kumpula, E. Kapetaniou, H. Gu R. K. Wierenga, R. Sterner, P. Babinger
Date :  22 Oct 13  (Deposition) - 25 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pcrb, Gggp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peterhoff, B. Beer, C. Rajendran, E. P. Kumpula, E. Kapetaniou, H. Guldan, R. K. Wierenga, R. Sterner, P. Babinger
A Comprehensive Analysis Of The Geranylgeranylglyceryl Phosphate Synthase Enzyme Family Identifies Novel Members And Reveals Mechanisms Of Substrate Specificity And Quaternary Structure Organization.
Mol. Microbiol. V. 92 885 2014
PubMed-ID: 24684232  |  Reference-DOI: 10.1111/MMI.12596

(-) Compounds

Molecule 1 - HEPTAPRENYLGLYCERYL PHOSPHATE SYNTHASE
    Chains: A
    EC Number: 2.5.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: PCRB, GK0274
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS
    Organism Taxid: 235909
    Strain: HTA426
    Synonym: HEPGP SYNTHASE, GLYCEROL-1-PHOSPHATE HEPTAPRENYLTRANSFERASE
 
Molecule 2 - HEPTAPRENYLGLYCERYL PHOSPHATE SYNTHASE
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: PCRB, GK0274
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS
    Organism Taxid: 235909
    Strain: HTA426
    Synonym: HEPGP SYNTHASE, GLYCEROL-1-PHOSPHATE HEPTAPRENYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
11GP2Ligand/IonSN-GLYCEROL-1-PHOSPHATE
2PE42Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:12 , TYR A:159 , GLU A:161 , GLY A:164 , GLY A:187 , GLY A:188 , GLY A:189 , GLY A:209 , ASN A:210 , HOH A:445 , HOH A:457 , HOH A:489BINDING SITE FOR RESIDUE 1GP A 301
2AC2SOFTWAREVAL A:66 , THR A:67 , PRO A:82 , TRP A:92 , ARG A:96 , ALA A:100 , VAL A:101BINDING SITE FOR RESIDUE PE4 A 302
3AC3SOFTWARELYS B:12 , TYR B:159 , GLU B:161 , GLY B:164 , GLY B:187 , GLY B:188 , GLY B:189 , VAL B:207 , GLY B:209 , ASN B:210 , HOH B:461 , HOH B:462 , HOH B:463 , HOH B:468 , HOH B:473BINDING SITE FOR RESIDUE 1GP B 301
4AC4SOFTWAREVAL B:66 , THR B:67 , PRO B:82 , ARG B:96 , ALA B:100 , MET B:108BINDING SITE FOR RESIDUE PE4 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NAE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NAE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NAE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NAE)

(-) Exons   (0, 0)

(no "Exon" information available for 4NAE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeee......hhhhhhhhhh....eeee..hhhhhhhhhhhhh.....eeee..........eeeeeee.........hhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhh......hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nae A   3 EIRAWRHVFKLDPNKPIDDERLERLCESGTDAVIVGVTIDNVLDLLARIRRFSVPCALEVTDVLTPGFDVYLVPIVLNSRQAEWIIGRHHEAVKQYGDMMNWDEIAAEGYCILNPECKAAKLTRADTELDVDDIVAYARLAEHLYKLPIFYLEYSGVYGDPSVVEKVKQALDQTQLFYGGGITTPEQAEHMARYADTVVVGNAIYDAFEQALATVAAVK 227
                                    12        22        32     || 46        56        66  ||    78        88        98       108       118       128       138       148       158       168       178       188       198       208       218         
                                                              38|                        69|                                                                                                                                                           
                                                               43                         72                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.eeeee...hhhhhhhhhh....eeee..hhhhhhhhhh.....eeee..........eeeeeee.........hhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhh.....hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeeee....hhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nae B   1 MEEIRAWRHVFKLDPIDDERLERLCESGTDAVIVGDNVLDLLARIRRFSVPCALEVTDVLTPGFDVYLVPIVLNSRQAEWIIGRHHEAVKQYGDMMNWDEIAAEGYCILNPECKAAKLTRADTELDVDDIVAYARLAEHLYKLPIFYLEYSGVYGDPSVVEKVKQALDQTQLFYGGGITTPEQAEHMARYADTVVVGNAIYDAFEQALATVAAVK 227
                                    10   ||   23        33    ||  50        60        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     
                                        14|                  38|                     69|                                                                                                                                                           
                                         18                   46                      72
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NAE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NAE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NAE)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4nae
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PCRB_GEOKA | Q5L3C1: 4naf

(-) Related Entries Specified in the PDB File

4jej 4mm1 4naf