4N8U - JenaLib

Title :   TWO-DOMAIN LACCASE FROM STREPTOMYCES VIRIDOCHROMOGENES AT 2.4 A RESOLUTION AC629

Authors :   A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky

Date :   18 Oct 13 (Deposition) - 29 Oct 14 (Release) - 29 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Two-Domain Laccase, Oxidoreductase, Multicopper Blue Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Gabdulkhakov, S. Tischenko, L. Yurevich, A. Lisov, A. Leontievsky
Two-Domain Laccase From Streptomyces Viridochromogenes At 2. 4 A Resolution Ac629
To Be Published
PubMed: search

Compounds

Molecule 1 - MULTICOPPER OXIDASE
	Chains	:	A, B, C
	EC Number	:	1.10.3.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE30
	Expression System Strain	:	BL21 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 33-313
	Organism Scientific	:	STREPTOMYCES VIRIDOCHROMOGENES
	Organism Taxid	:	1938
	Synonym	:	LACCASE

Structural Features

Chains, Units

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 16)

Asymmetric/Biological Unit (3, 16)

No.	Name	Count	Type	Full Name
1	CL	6	Ligand/Ion	CHLORIDE ION
2	CU	9	Ligand/Ion	COPPER (II) ION
3	TRS	1	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:228 , CYS A:285 , HIS A:290 , MET A:295	BINDING SITE FOR RESIDUE CU A 401
02	AC2	SOFTWARE	HIS A:233 , HIS A:284 , HOH A:517 , HIS B:155	BINDING SITE FOR RESIDUE CU A 402
03	AC3	SOFTWARE	HIS A:101 , HIS A:153 , HIS C:286	BINDING SITE FOR RESIDUE CU A 403
04	AC4	SOFTWARE	TYR A:226	BINDING SITE FOR RESIDUE CL A 404
05	AC5	SOFTWARE	GLY A:180	BINDING SITE FOR RESIDUE CL A 405
06	AC6	SOFTWARE	HIS B:228 , CYS B:285 , HIS B:290 , MET B:295	BINDING SITE FOR RESIDUE CU B 401
07	AC7	SOFTWARE	HIS B:233 , HIS B:284 , HIS C:155	BINDING SITE FOR RESIDUE CU B 402
08	AC8	SOFTWARE	HIS A:286 , HOH A:517 , HIS B:101 , HIS B:153	BINDING SITE FOR RESIDUE CU B 403
09	AC9	SOFTWARE	ARG B:167 , ASP B:194 , MET B:195 , TYR B:226 , HOH B:521	BINDING SITE FOR RESIDUE TRS B 404
10	BC1	SOFTWARE	PRO B:74 , LEU B:75	BINDING SITE FOR RESIDUE CL B 405
11	BC2	SOFTWARE	ARG B:46 , HIS B:47	BINDING SITE FOR RESIDUE CL B 406
12	BC3	SOFTWARE	HIS C:228 , CYS C:285 , HIS C:290 , MET C:295	BINDING SITE FOR RESIDUE CU C 401
13	BC4	SOFTWARE	HIS A:155 , HIS C:233 , HIS C:284	BINDING SITE FOR RESIDUE CU C 402
14	BC5	SOFTWARE	HIS B:231 , HIS B:286 , HOH B:519 , HIS C:101 , HIS C:153	BINDING SITE FOR RESIDUE CU C 403
15	BC6	SOFTWARE	TYR C:226 , TYR C:227	BINDING SITE FOR RESIDUE CL C 404
16	BC7	SOFTWARE	ILE A:107 , ASN A:115 , GLY C:279 , ALA C:280 , PRO C:309 , GLY C:310	BINDING SITE FOR RESIDUE CL C 405

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Asymmetric/Biological Unit

No.	Residues
1	Ile A:71	-	Pro A:72
2	Gly A:205	-	Pro A:206
3	Ile B:71	-	Pro B:72
4	Gly B:205	-	Pro B:206
5	Ile C:71	-	Pro C:72
6	Gly C:205	-	Pro C:206

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeee.....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n8u A  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGH 311
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306

Chain B from PDB  Type:PROTEIN  Length:276
                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeeeeeeeee.....eeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeeee....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n8u B  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGHE 312
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306

Chain C from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeeeee...eeeee............eeee...eeeeeeee........ee.....hhhhh.............eeeeee.....ee.....ee....eeeeee........hhhhhhh..eeeeeee........eeeeeeee..ee..........eeee...eeeeeeeee....eeeee....ee...............ee.eeee....eeeeeee.......eeeeeee.hhhhhhh..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n8u C  37 RTAPAGGEVRHLKLYIEKLADGQLGYGFEKGRATIPGPLIELNEGDTAHIEVENTLDVPASLHVHGLDYEITSDGTKLNRSDVEPGGTRTYTWRTHAPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRKGLYGPVVVRRKGDVLPDATHTIVFNDMLINNQPAHSGPNFEATVGDRVEFVMITHGEYYHTFHMHGHRWADNRTGLLTGPDDPSQVIDNKIVGPADSFGFQVIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKKDGTIPGH 311
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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	Cis Peptide Bonds
		Gly A:205 - Pro A:206	[ RasMol ]
		Gly B:205 - Pro B:206	[ RasMol ]
		Gly C:205 - Pro C:206	[ RasMol ]
		Ile A:71 - Pro A:72	[ RasMol ]
		Ile B:71 - Pro B:72	[ RasMol ]
		Ile C:71 - Pro C:72	[ RasMol ]

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