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(-) Description

Title :  PARTIAL ROTATIONAL ORDER DISORDER STRUCTURE OF HUMAN STEFIN B
 
Authors :  M. Renko, A. Taler-Vercic, M. Mihelic, E. Zerovnik, D. Turk
Date :  14 Oct 13  (Deposition) - 09 Apr 14  (Release) - 09 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  0,1,2,3,4,5,6,7,8,9
Biol. Unit 1:  2  (1x)
Biol. Unit 2:  1  (1x)
Biol. Unit 3:  9  (1x)
Biol. Unit 4:  8  (1x)
Biol. Unit 5:  7  (1x)
Biol. Unit 6:  6  (1x)
Biol. Unit 7:  4  (1x)
Biol. Unit 8:  3  (1x)
Biol. Unit 9:  0  (1x)
Biol. Unit 10:  5  (1x)
Keywords :  Stefin B, Cystatin B, Partial Rotational Order Disorder, Crystal Disorder, Hydrolase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Renko, A. Taler-Vercic, M. Mihelic, E. Zerovnik, D. Turk
Partial Rotational Lattice Order-Disorder In Stefin B Crystals
Acta Crystallogr. , Sect. D V. 70 1015 2014
PubMed: search  |  Reference-DOI: 10.1107/S1399004714000091

(-) Compounds

Molecule 1 - CYSTATIN-B
    Chains: 2, 1, 9, 8, 7, 6, 4, 3, 0, 5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 8-98
    Gene: CSTB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: STEFIN-B, CPI-B, LIVER THIOL PROTEINASE INHIBITOR

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : 0123456789
Biological Unit 1 (1x):   2       
Biological Unit 2 (1x):  1        
Biological Unit 3 (1x):          9
Biological Unit 4 (1x):         8 
Biological Unit 5 (1x):        7  
Biological Unit 6 (1x):       6   
Biological Unit 7 (1x):     4     
Biological Unit 8 (1x):    3      
Biological Unit 9 (1x): 0         
Biological Unit 10 (1x):      5    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 8 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION
Biological Unit 10 (0, 0)
No.NameCountTypeFull Name
1SO4-1Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA 2:8 , THR 2:9 , LYS 2:44 , GLN 2:46 , TYR 2:97 , HOH 2:273 , HOH 2:274BINDING SITE FOR RESIDUE SO4 2 101
2AC2SOFTWAREALA 1:8 , THR 1:9 , LYS 1:44 , GLN 1:46 , TYR 1:97 , HOH 1:204 , HOH 1:205BINDING SITE FOR RESIDUE SO4 1 101
3AC3SOFTWAREALA 9:8 , THR 9:9 , LYS 9:44 , GLN 9:46 , TYR 9:97 , HOH 9:202 , HOH 9:204BINDING SITE FOR RESIDUE SO4 9 101
4AC4SOFTWAREALA 8:8 , THR 8:9 , LYS 8:44 , GLN 8:46 , TYR 8:97 , HOH 8:206 , HOH 8:275BINDING SITE FOR RESIDUE SO4 8 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N6V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N6V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N6V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N6V)

(-) Exons   (0, 0)

(no "Exon" information available for 4N6V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 0 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v0_ 0: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeee.....eeeeeeee.........eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 0  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 1 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v1_ 1: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.........eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 1  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 2 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v2_ 2: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 2  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 3 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v3_ 3: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 3  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 4 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v4_ 4: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 4  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 5 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v5_ 5: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhh.......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 5  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 6 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v6_ 6: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeee.....eeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 6  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 7 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v7_ 7: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 7  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 8 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v8_ 8: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.hhhhh...eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 8  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97 


Chain 9 from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4n6v9_ 9: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.hhhhhhhhhhhhhhhhhhhh......eeeeeeeee...eeeeeeeeee..eeeeeeeee.........eeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4n6v 9  8 ATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF 98
                                    17        27        37        47        57        67        77        87        97
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N6V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N6V)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        CYTB_HUMAN | P04080: 1stf 2oct

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