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(-) Description

Title :  SOYBEAN SERINE ACETYLTRANSFERASE COMPLEXED WITH COA
 
Authors :  H. Yi, S. Dey, S. Kumaran, H. B. Krishnan, J. M. Jez
Date :  11 Oct 13  (Deposition) - 13 Nov 13  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D,E  (1x)
Biol. Unit 2:  B,C,F  (1x)
Keywords :  Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Yi, S. Dey, S. Kumaran, S. G. Lee, H. B. Krishnan, J. M. Jez
Structure Of Soybean Serine Acetyltransferase And Formation Of The Cysteine Regulatory Complex As A Molecular Chaperone
J. Biol. Chem. V. 288 36463 2013
PubMed-ID: 24225955  |  Reference-DOI: 10.1074/JBC.M113.527143

(-) Compounds

Molecule 1 - SERINE ACETYLTRANSFERASE APOENZYME
    Chains: A, B, C, D, E, F
    EC Number: 2.3.1.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 469008
    Organism Common: SOYBEANS
    Organism Scientific: GLYCINE MAX
    Organism Taxid: 3847

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  DE 
Biological Unit 2 (1x):  BC  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1COA5Ligand/IonCOENZYME A
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1COA3Ligand/IonCOENZYME A
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:169 , LEU A:188 , ALA A:215 , LYS A:230 , GLY A:232 , ALA A:233 , THR A:246 , VAL A:248 , GLY E:194 , GLY E:195 , LEU E:220 , LEU E:238 , ASN E:250BINDING SITE FOR RESIDUE COA A 300
2AC2SOFTWAREGLY B:195 , THR B:196 , LEU B:220 , LEU B:238 , ASN B:250 , ASP C:168 , HIS C:169 , LEU C:188 , ALA C:215 , LYS C:230 , GLY C:232 , ALA C:233 , THR C:246 , VAL C:248 , GLY C:249 , ARG C:253BINDING SITE FOR RESIDUE COA C 700
3AC3SOFTWAREGLY A:194 , GLY A:195 , THR A:196 , LEU A:238 , ASN A:250 , LEU D:188 , HIS D:189 , ALA D:215 , LYS D:230 , GLY D:232 , ALA D:233 , THR D:246 , VAL D:248BINDING SITE FOR RESIDUE COA D 500
4AC4SOFTWAREGLY D:195 , THR D:196 , LEU D:220 , VAL D:236 , LEU D:238 , ASN D:250 , ASP E:168 , HIS E:169 , LEU E:188 , ALA E:215 , LYS E:230 , GLY E:232 , ALA E:233 , THR E:246 , VAL E:248BINDING SITE FOR RESIDUE COA E 400
5AC5SOFTWAREGLY C:194 , LEU C:220 , VAL C:236 , LEU C:238 , ASN C:250 , ASP F:168 , HIS F:169 , LEU F:188 , ALA F:215 , LYS F:230 , ALA F:233 , THR F:246 , VAL F:248BINDING SITE FOR RESIDUE COA F 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N6B)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:250 -Pro A:251
2Asn B:250 -Pro B:251
3Asn C:250 -Pro C:251
4Asn D:250 -Pro D:251
5Asn E:250 -Pro E:251
6Asn F:250 -Pro F:251

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N6B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N6B)

(-) Exons   (0, 0)

(no "Exon" information available for 4N6B)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains d4n6ba_ A: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.eee....ee....ee.....eee....ee....ee....eee........ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b A  17 EGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    26        36        46        56        66        76        86        96      |109       119       129       139       149       159       169       179       189      |202       212       222       232       242       252   
                                                                                                                103|                                                                                      196|                                                       
                                                                                                                 107                                                                                       200                                                       


Chain B from PDB  Type:PROTEIN  Length:236
                                                                                                                                                                                                                                                                            
               SCOP domains d4n6bb_ B: automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.eee....ee....ee.....eee....ee....ee....eee.......ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b B  16 EEGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195 ||    209       219       229       239       249      
                                                                                                                                                                                                               197|                                                     
                                                                                                                                                                                                                202                                                     


Chain C from PDB  Type:PROTEIN  Length:233
                                                                                                                                                                                                                                                                         
               SCOP domains d4n6bc_ C: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.eee....ee...........eee....ee....ee....eee.....ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b C  15 DEEGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDPASYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    24        34        44        54        64        74        84        94       104||     116       126       136       146       156       166       176       186       196|      212       222       232       242       252   
                                                                                                                    105|                                                                                     196|                                                    
                                                                                                                     108                                                                                      203                                                    


Chain D from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains d4n6bd_ D: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.eee....ee....ee.....eee....ee....ee....eee.......ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b D  17 EGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    26        36        46        56        66        76        86        96      |109       119       129       139       149       159       169       179       189      |203       213       223       233       243       253  
                                                                                                                103|                                                                                      196|                                                      
                                                                                                                 107                                                                                       201                                                      


Chain E from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains d4n6be_ E: automated matches                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.ee....ee....eee.....ee....ee....eee...eee.........ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b E  17 EGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDPACVSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTVGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196|      208       218       228       238       248       
                                                                                                                                                                                                             196|                                                        
                                                                                                                                                                                                              199                                                        


Chain F from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains d4n6bf_ F: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhheee....ee....ee.....eee....ee....ee....eee........ee....ee....eee...ee....ee....ee........eee....ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n6b F  17 EGWVWGQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFSSDPSLRSAAVADLRAARERDSYSHCLLNYKGFLACQAHRVAHLLWRQSRRPLALALHSRIANVFAVDIHPAARIGKGILFDHATGVVVGETAVIGNNVSILHHVTLGGTGGDRHPKIGDGVLIGAGATILGNIKIGEGAKVGAGSVVLIDVPPRTTAVGNPARLV 255
                                    26        36        46        56        66        76        86        96      |110       120       130       140       150       160       170       180       190     ||203       213       223       233       243       253  
                                                                                                                103|                                                                                     196|                                                       
                                                                                                                 108                                                                                      200
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N6B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N6B)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        I1KHY6_SOYBN | I1KHY6: 4n69 4n6a

(-) Related Entries Specified in the PDB File

4n69 4n6a