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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ACYL-COA DEHYDROGENASE WITH BOUND FADH2 FROM BURKHOLDERIA CENOCEPACIA J2315
 
Authors :  Seattle Structural Genomics Center For Infectious Disease
Date :  09 Oct 13  (Deposition) - 30 Oct 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Acyl-Coa Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, J. W. Fairman, T. E. Edwards, D. Lorimer
Crystal Structure Of A Putative Acyl-Coa Dehydrogenase With Bound Fadh2 From Burkholderia Cenocepacia J2315
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ACYL-COA DEHYDROGENASE
    Chains: A, B
    EC Number: 1.3.99.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BCAM2196, BCEJ2315_56330
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: J2315

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 23)

Asymmetric Unit (2, 23)
No.NameCountTypeFull Name
1FDA2Ligand/IonDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2UNX21Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1FDA2Ligand/IonDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2UNX22Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (2, 22)
No.NameCountTypeFull Name
1FDA2Ligand/IonDIHYDROFLAVINE-ADENINE DINUCLEOTIDE
2UNX20Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:123 , LEU A:125 , THR A:126 , GLY A:131 , SER A:132 , PHE A:156 , THR A:158 , THR A:209 , ARG A:268 , GLN A:270 , PHE A:271 , HIS A:278 , GLN A:336 , ILE A:337 , GLY A:339 , GLY A:340 , ILE A:358 , TYR A:362 , THR A:365 , GLU A:367 , MET A:371 , HOH A:516 , HOH A:525 , HOH A:585 , GLN B:279BINDING SITE FOR RESIDUE FDA A 401
2AC2SOFTWAREGLN A:279 , PHE B:123 , LEU B:125 , THR B:126 , PHE B:156 , THR B:158 , LYS B:201 , THR B:209 , HIS B:278 , GLN B:336 , ILE B:337 , GLY B:339 , GLY B:340 , ILE B:361 , TYR B:362 , THR B:365 , GLU B:367 , MET B:371 , HOH B:511 , HOH B:530BINDING SITE FOR RESIDUE FDA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N5F)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu B:175 -Ala B:176
2Ala B:176 -Gly B:177

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N5F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N5F)

(-) Exons   (0, 0)

(no "Exon" information available for 4N5F)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:378
                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4n5fa1 A:0-228 automated matches                                                                                                                                                                                                    d4n5fa2 A:229-377 automated matches                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee...............eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eee.............eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4n5f A   0 HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHAGSEANNLRTRAELRDGQWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL 377
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369        


Chain B from PDB  Type:PROTEIN  Length:369
                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4n5fb1 B:0-228 automated matches                                                                                                                                                                                           d4n5fb2 B:229-377 automated matches                                                                                                                   SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........eee....eeeeeeeeee......eeeeeee.........eeeeeee.....eee.............eeeeeeeeee.hhh.ee....hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n5f B   0 HMDELYTEDQRMIRDAARAFATEMLAPNAAQWDHDAHLPDAIVAQLGELGLLGMIVPQELGGSYTDYVAYALAMEEVAAGDAACATMMSVHNSVGCGPILGFGTPAQKDRWLADMAAGRVIGAFCLTEPHLRTRAELRDWVLNGAKQFVTNGQRAGVAIVFAMTDPEAGKRGISAFLVPTDTPGFIVGKPEKKMGIRASDTCPITFENCAIPEDNLLGNRGEGLKIALSNLEGGRIGIAAQALGIARAAFDKARRYAGERVQFGKPIAEHQAIQQKLADMAVQINAARLLVHHAAKLRTAGLPCLSEASQAKLFASEMAERVCSDAIQIHGGYGYLVDYEVERHYRDARITQIYEGTSEVQRMVIARQL 377
                                     9        19        29        39        49        59        69        79        89        99       109       119       129|      148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368         
                                                                                                                                                           129|     145|                                                                                                                                                                                                                                     
                                                                                                                                                            137      148
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N5F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N5F)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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