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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF TANKYRASE 1 WITH COMPOUND 3 [(4S)-3-{4-[6-AMINO-5-(PYRIMIDIN-2-YL)PYRIDIN-3-YL]PHENYL}-5,5-DIMETHYL-4-PHENYL-1, 3-OXAZOLIDIN-2-ONE]
 
Authors :  X. Huang
Date :  08 Oct 13  (Deposition) - 11 Dec 13  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tankyrase, Parp, Inhibitor, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Huang, A. Guzman-Perez, L. Acquaviva, V. Berry, H. Bregman, J. Dovey, H. Gunaydin, X. Huang, L. Huang, D. Saffran, R. Serafino, S. Schneider, C. Wilson, E. F. Dimauro
Structure-Based Design Of 2-Aminopyridine Oxazolidinones As Potent And Selective Tankyrase Inhibitors.
Acs Med Chem Lett V. 4 1218 2013
PubMed-ID: 24900633  |  Reference-DOI: 10.1021/ML4003315

(-) Compounds

Molecule 1 - TANKYRASE-1
    Chains: A, B
    EC Number: 2.4.2.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1104-1314
    Gene: TNKS, TNKS1
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: TANK1, ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 5, ARTD5, TRF1-INTERACTING ANKYRIN-RELATED ADP-RIBOSE POLYMERASE 1, TANKYRASE I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
12GV2Ligand/Ion(4S)-3-{4-[6-AMINO-5-(PYRIMIDIN-2-YL)PYRIDIN-3-YL]PHENYL}-5,5-DIMETHYL-4-PHENYL-1,3-OXAZOLIDIN-2-ONE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
12GV1Ligand/Ion(4S)-3-{4-[6-AMINO-5-(PYRIMIDIN-2-YL)PYRIDIN-3-YL]PHENYL}-5,5-DIMETHYL-4-PHENYL-1,3-OXAZOLIDIN-2-ONE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
12GV1Ligand/Ion(4S)-3-{4-[6-AMINO-5-(PYRIMIDIN-2-YL)PYRIDIN-3-YL]PHENYL}-5,5-DIMETHYL-4-PHENYL-1,3-OXAZOLIDIN-2-ONE
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1234 , HIS A:1237 , CYS A:1242 , CYS A:1245BINDING SITE FOR RESIDUE ZN A 1401
2AC2SOFTWAREHIS A:1184 , PHE A:1188 , ALA A:1191 , ILE A:1192 , GLY A:1196 , PHE A:1197 , ASP A:1198 , HIS A:1201 , PHE A:1208 , GLY A:1211 , TYR A:1213BINDING SITE FOR RESIDUE 2GV A 1402
3AC3SOFTWARECYS B:1234 , HIS B:1237 , CYS B:1242 , CYS B:1245BINDING SITE FOR RESIDUE ZN B 1401
4AC4SOFTWAREHIS B:1184 , PHE B:1188 , ALA B:1191 , GLY B:1196 , PHE B:1197 , ASP B:1198 , HIS B:1201 , GLY B:1211 , TYR B:1213BINDING SITE FOR RESIDUE 2GV B 1402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N4T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4N4T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N4T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N4T)

(-) Exons   (0, 0)

(no "Exon" information available for 4N4T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhh.hhhhh.........eee..hhhhhhh...hhhhh...............eeeeeeeee...eeee..............eeee..........eeee.hhh.eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4n4t A 1104 QGTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEH 1315
                                  1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243      1253      1263      1273      1283      1293      1303      1313  


Chain B from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....hhhhhhhhhhhhhh................eeeeeeeeeehhhhhhhhhhhhhhhhhh......eeeeee...hhhhhhhhh.hhhhh......eeee.hhhhhhh...hhhhh...............eeeeeeeee...eee.............eeee..eeee.hhh.eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4n4t B 1104 QGTILLDLAPEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSKMAHAPPGHHSVIGYAEYVIYRGEQAYPEYLITYQIMKPEH 1315
                                  1113      1123      1133      1143      1153      1163      1173      1183      1193      1203||    1216      1226      1236      1246      1256      1268      1278 ||   1296      1306         
                                                                                                                             1204|                                                    1264|         1280|                          
                                                                                                                              1208                                                     1267          1289
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N4T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N4T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N4T)

(-) Gene Ontology  (41, 41)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNKS1_MOUSE | Q6PFX9: 3utm 5hkp

(-) Related Entries Specified in the PDB File

4k4f 4n3r 4n4v