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(-) Description

Title :  CRYSTAL STRUCTURE OF THA8 IN COMPLEX WITH ZM1A-6 RNA
 
Authors :  J. Ke, R. Z. Chen, T. Ban, X. E. Zhou, X. Gu, J. S. Brunzelle, J. K. Zhu, K. Me H. E. Xu
Date :  06 Oct 13  (Deposition) - 30 Oct 13  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Pentatricopeptide Repeat (Ppr) Protein, Small Intron Rna Binding, Group Ii Intron Rna Splicing, Chloroplast, Splicing-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Ke, R. Z. Chen, T. Ban, X. E. Zhou, X. Gu, M. H. Tan, C. Chen, Y. Kang, J. S. Brunzelle, J. K. Zhu, K. Melcher, H. E. Xu
Structural Basis For Rna Recognition By A Dimeric Ppr-Protein Complex.
Nat. Struct. Mol. Biol. V. 20 1377 2013
PubMed-ID: 24186060  |  Reference-DOI: 10.1038/NSMB.2710

(-) Compounds

Molecule 1 - THA8 RNA BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BRADI2G00245, BRADI2G00270
    Organism Common: PURPLE FALSE BROME
    Organism Scientific: BRACHYPODIUM DISTACHYON
    Organism Taxid: 15368
 
Molecule 2 - ZM1A-6 RNA
    Chains: B
    Engineered: YES
    Other Details: ZM1A-6 RNA SEQUENCE IS CHEMICALLY SYNTHESIZED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4N2S)

(-) Sites  (0, 0)

(no "Site" information available for 4N2S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4N2S)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:159 -Glu A:160

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4N2S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:197
                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n2s A  44 SLSTEAIHAVQALKRLTAADRSPPAATAAASAALGRLLRADLLAAMAELQRQGHWSLALAALHVARAEPWYRPDPELYATFVSSSPSNDPAAAAAVDALVEAFIEEKERGAAGGSSEGVWVGEDVYKLTRLVRALVAKGRARAAWRVYEAAVRKGGCEVDEYMYRVMAKGMKRLGLDEEAAEVEADLADWEARHLPD 240
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       


Chain B from PDB  Type:RNA  Length:4
                                    
                 4n2s B   3 GGAA   6
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N2S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N2S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N2S)

(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Ser A:159 - Glu A:160   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        I1HB13_BRADI | I1HB13: 4me2 4n2q

(-) Related Entries Specified in the PDB File

4me2 APO THA8 STRUCTURE
4n2q THA8 STRUCTURE IN COMPLEX WITH ZM4 RNA