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(-) Description

Title :  CRYSTAL STRUCTURE OF CAS1 FROM ARCHAEOGLOBUS FULGIDUS AND ITS NUCLEOLYTIC ACTIVITY
 
Authors :  T. Y. Kim, M. Shin, L. H. T. Yen, J. S. Kim
Date :  01 Oct 13  (Deposition) - 15 Jan 14  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Y. Kim, M. Shin, L. H. T. Yen, J. S. Kim
Crystal Structure Of Cas1 From Archaeoglobus Fulgidus And Characterization Of Its Nucleolytic Activity
Biochem. Biophys. Res. Commun. V. 441 720 2013
PubMed-ID: 24211577  |  Reference-DOI: 10.1016/J.BBRC.2013.10.122

(-) Compounds

Molecule 1 - CRISPR-ASSOCIATED ENDONUCLEASE CAS1 1
    Chains: A, B
    EC Number: 3.1.-.-
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric/Biological Unit (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4N06)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:279 -A:286
2B:279 -B:286

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:80 -Gly A:81
2Gly B:-1 -Gly B:0

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4N06)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4N06)

(-) Exons   (0, 0)

(no "Exon" information available for 4N06)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:346
                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeee..eeeeee..eeeeeehhh.eeeeeee...eeehhhhhhhhhh..eeeee.....eeeee......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh.hhhhhhhhhhhhhhhh...hhh.eeee..eeeehhhhhhhhhhhhhhhhhheeee..eeeehhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n06 A  -1 GGmRLVVDGFGKYLGIENGLIVVKEKGKALRKVRPEDLKQVLIIGKAAISSDAIKLLLKNRVDVVFLDFNGEILGRLSHPLIGTAKTRREQYLAYGDKRGVHLAKEFIKAKmANQmAILTNLAKARKDSNPEVAESLLKAKKEIDACLNELDGVEAEmIDKVRERLLGIEGKASKHYWDAISLVIPEEYRFNGRRGIEIGSPRYAKDIVNAmLNYGYSILLAECVKAVELAGLDPYAGFLHVDVSGRSSLAIDLmENFRQQVVDRVVLRLISYRQIKPEDCEKRNmVCQLSDNARRLLLASLLERLDSKTQYRGRNLAYSSIILLHARDVVAFLRGERRYEGFVQK 344
                              |      8        18        28        38        48        58        68        78        88        98       108 |   | 118       128       138       148       158       168       178       188       198       208 |     218       228       238       248    |  258       268       278     | 288       298       308       318       328       338      
                              |                                                                                                          110-MSE                                       156-MSE                                               210-MSE                                    253-MSE                        284-MSE                                                        
                              1-MSE                                                                                                          114-MSE                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:347
                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...eeeeee..eeeeee..eeeeeehhh.eeeeeee...eeehhhhhhhhhh..eeeee.....eeeee......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhh.hhhhhhhhhhhhhhhh...hhh.eeee..eeeehhhhhhhhhhhhhhhhh.eeee..eeeehhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4n06 B  -1 GGmRLVVDGFGKYLGIENGLIVVKEKGKALRKVRPEDLKQVLIIGKAAISSDAIKLLLKNRVDVVFLDFNGEILGRLSHPLIGTAKTRREQYLAYGDKRGVHLAKEFIKAKmANQmAILTNLAKARKDSNPEVAESLLKAKKEIDACLNELDGVEAEmIDKVRERLLGIEGKASKHYWDAISLVIPEEYRFNGRRGIEIGSPRYAKDIVNAmLNYGYSILLAECVKAVELAGLDPYAGFLHVDVSGRSSLAIDLmENFRQQVVDRVVLRLISYRQIKPEDCEKRNmVCQLSDNARRLLLASLLERLDSKTQYRGRNLAYSSIILLHARDVVAFLRGERRYEGFVQKW 345
                              |      8        18        28        38        48        58        68        78        88        98       108 |   | 118       128       138       148       158       168       178       188       198       208 |     218       228       238       248    |  258       268       278     | 288       298       308       318       328       338       
                              1-MSE                                                                                                      110-MSE                                       156-MSE                                               210-MSE                                    253-MSE                        284-MSE                                                         
                                                                                                                                             114-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4N06)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4N06)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4N06)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly B:-1 - Gly B:0   [ RasMol ]  
    Ile A:80 - Gly A:81   [ RasMol ]  
 

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 Related Entries

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