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(-) Description

Title :  CRYSTAL STRUCTURE OF NU-CLASS GLUTATHIONE TRANSFERASE YGHU FROM STREPTOCOCCUS SANGUINIS SK36, COMPLEX WITH GLUTATHIONE DISULFIDE, TARGET EFI-507286
 
Authors :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washin A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, N. Al M. Stead, J. Love, J. A. Gerlt, R. N. Armstrong, S. C. Almo, Enzyme Func Initiative (Efi)
Date :  30 Sep 13  (Deposition) - 16 Oct 13  (Release) - 16 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione S-Transferase, Enzyme Function Initiative, Efi, Structural Genomics, Transferase, Glutathione Disulfide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, R. Bhosle, B. Hillerich, R. D. Seidel, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, H. J. Imker, N. Al Obaidi, M. Stead, J. Love, J. A. Gerlt, R. N. Armstrong, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of Glutathione S-Transferase Yghu (Target Efi-507286)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SSA_1418
    Organism Scientific: STREPTOCOCCUS SANGUINIS
    Organism Taxid: 388919
    Strain: SK36

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2GDS2Ligand/IonOXIDIZED GLUTATHIONE DISULFIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:19 , ASN A:23 , THR A:49 , ASN A:51 , GLN A:84 , LYS A:97 , ILE A:98 , PRO A:99 , GLU A:114 , SER A:115 , PRO A:152 , GLY A:155 , GLY A:156 , TRP A:212 , HOH A:412 , HOH A:437 , HOH A:454 , HOH A:457 , HOH A:501 , HOH A:503 , HOH A:554 , HOH A:574 , HOH A:577 , HOH A:592 , HOH A:608 , HOH A:638 , ARG B:175BINDING SITE FOR RESIDUE GDS A 301
2AC2SOFTWAREARG A:175 , HOH A:404 , PHE B:19 , ILE B:22 , ASN B:23 , THR B:49 , ASN B:51 , ILE B:79 , GLN B:84 , LYS B:97 , ILE B:98 , GLU B:114 , SER B:115 , PRO B:152 , GLY B:155 , GLY B:156 , TRP B:212 , ACT B:302 , HOH B:403 , HOH B:415 , HOH B:422 , HOH B:438 , HOH B:452 , HOH B:522 , HOH B:524 , HOH B:599 , HOH B:600BINDING SITE FOR RESIDUE GDS B 301
3AC3SOFTWAREPRO B:50 , TYR B:164 , TYR B:222 , GDS B:301 , HOH B:595 , HOH B:614BINDING SITE FOR RESIDUE ACT B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MZW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:98 -Pro A:99
2Ile B:98 -Pro B:99

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MZW)

(-) Exons   (0, 0)

(no "Exon" information available for 4MZW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......................hhhhh.....................eeeee..hhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhh......eeee......eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mzw A -14 SGVDLGTENTYQLPKVWSAADSDQGKFSGINQPTAGVRFEQKLPVGKEPFQLYSLGTPNGVKVTIMLEELLAAGVTEATYDLYKISIMDGDQFGSDFVKINPNSKIPALLDQSGHKPIPVFESANILLYLAEKFGKLIPSDLAGRTEVLNWLFWQTGAAPFLGGGFGHFFNYAPEKLEYPINRFTMEAKRQLDLLDKELAKKAYIAGEDYSIADIAIWSWYGQLVQDKLYPGAAEFLDAASYKHLSAWAEKIAARPAVQRGLAAEYQEIK 262
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
                                   -6|                                                                                                                                                                                                                                                                    
                                     2                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhh.....................eeeee..hhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhh......eeee......eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mzw B   2 TYQLPKVWSAADSDQGKFSGINQPTAGVRFEQKLPVGKEPFQLYSLGTPNGVKVTIMLEELLAAGVTEATYDLYKISIMDGDQFGSDFVKINPNSKIPALLDQSGHKPIPVFESANILLYLAEKFGKLIPSDLAGRTEVLNWLFWQTGAAPFLGGGFGHFFNYAPEKLEYPINRFTMEAKRQLDLLDKELAKKAYIAGEDYSIADIAIWSWYGQLVQDKLYPGAAEFLDAASYKHLSAWAEKIAARPAVQRGLAAEYQEIK 262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MZW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MZW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MZW)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MZW)

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