5EOE - JenaLib

Title :   CRYSTAL STRUCTURE OF EXTENDED-SPECTRUM BETA-LACTAMASE BEL-1 (ORTHORHOMBIC FORM)

Authors :   C. Pozzi, F. De Luca, M. Benvenuti, J. D. Docquier, S. Mangani

Date :   10 Nov 15 (Deposition) - 21 Sep 16 (Release) - 07 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Extended-Spectrum Beta-Lactamase, Citrate, Native, Pseudomonas Aeruginosa (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Pozzi, F. De Luca, M. Benvenuti, L. Poirel, P. Nordmann, G. M. Rossolini, S. Mangani, J. D. Docquier
Crystal Structure Of The Pseudomonas Aeruginosa Bel-1 Extended-Spectrum Beta-Lactamase And Its Complexes With Moxalactam And Imipenem.
Antimicrob. Agents Chemother. V. 60 7189 2016
PubMed-ID: 27671060 | Reference-DOI: 10.1128/AAC.00936-16

Compounds

Molecule 1 - BETA-LACTAMASE
	Chains	:	A, B
	EC Number	:	3.5.2.6
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	BLA(BEL1), BLABEL-1
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (7, 16)

Asymmetric Unit (7, 16)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CIT	2	Ligand/Ion	CITRIC ACID
3	CL	6	Ligand/Ion	CHLORIDE ION
4	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
5	IPA	2	Ligand/Ion	ISOPROPYL ALCOHOL
6	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
7	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (5, 5)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CIT	1	Ligand/Ion	CITRIC ACID
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	IPA	1	Ligand/Ion	ISOPROPYL ALCOHOL
6	MRD	1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
7	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (4, 5)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CIT	1	Ligand/Ion	CITRIC ACID
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
5	IPA	1	Ligand/Ion	ISOPROPYL ALCOHOL
6	MRD	-1	Ligand/Ion	(4R)-2-METHYLPENTANE-2,4-DIOL
7	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:96 , ALA A:98 , PRO A:99 , LYS A:102 , HOH B:759	binding site for residue CL A 301
02	AC2	SOFTWARE	HIS A:32 , ASN A:33 , GLN A:34	binding site for residue EDO A 302
03	AC3	SOFTWARE	SER A:62 , LYS A:65 , TYR A:97 , SER A:123 , ASN A:125 , THR A:209 , LYS A:227 , THR A:228 , GLY A:229 , SER A:230 , HOH A:454 , HOH A:523 , HOH A:530 , HOH A:559 , HOH A:566	binding site for residue CIT A 303
04	AC4	SOFTWARE	ARG A:236 , GLN A:262 , GLY A:263 , GLU A:264 , GLU A:265 , ALA A:267 , LEU A:268 , HOH A:458 , HOH A:463 , HOH A:494 , HOH A:529 , HOH A:674	binding site for residue 1PE A 304
05	AC5	SOFTWARE	ARG A:201 , ARG A:202 , ILE A:205 , HOH A:668 , HOH A:709 , THR B:107	binding site for residue IPA A 305
06	AC6	SOFTWARE	GLU A:23 , TYR A:52 , ARG A:53 , HOH A:590	binding site for residue MRD A 306
07	AC7	SOFTWARE	ARG A:236 , ARG A:266 , HOH A:506	binding site for residue CL A 307
08	AC8	SOFTWARE	LYS A:197 , SER B:43 , ASN B:45	binding site for residue CL B 301
09	AC9	SOFTWARE	HOH A:727 , GLU B:96 , ALA B:98 , PRO B:99 , LYS B:102	binding site for residue CL B 302
10	AD1	SOFTWARE	ARG B:236 , ARG B:266 , HOH B:489	binding site for residue CL B 303
11	AD2	SOFTWARE	ASP B:90 , ALA B:92 , PHE B:93 , LEU B:94 , GLU B:95 , HOH B:404 , HOH B:405 , HOH B:406 , HOH B:415 , HOH B:429 , HOH B:614 , HOH B:687 , HOH B:691	binding site for residue PGE B 304
12	AD3	SOFTWARE	TYR B:52 , ARG B:53 , HOH B:469 , HOH B:605 , HOH B:740	binding site for residue IPA B 305
13	AD4	SOFTWARE	GLY B:149 , ASP B:150 , LYS B:151 , VAL B:152 , SER B:178 , HOH B:447 , HOH B:457 , HOH B:656 , HOH B:670	binding site for residue EDO B 306
14	AD5	SOFTWARE	THR B:166 , PRO B:167 , ASN B:233	binding site for residue EDO B 307
15	AD6	SOFTWARE	SER B:62 , TYR B:97 , SER B:123 , ASN B:125 , THR B:209 , LYS B:227 , THR B:228 , GLY B:229 , SER B:230 , HOH B:463 , HOH B:514 , HOH B:568 , HOH B:575 , HOH B:592 , HOH B:651	binding site for residue CIT B 308
16	AD7	SOFTWARE	ASP B:90 , SER B:91 , HOH B:720	binding site for residue CL B 309

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eeeeeeee....eeeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh...hhhhhhhh...eeehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eoe A  21 DFEHAISDLEAHNQAKIGVALVSENGNLIQGYRANERFAMCSTFKLPLAALVLSRIDAGEENPERKLHYDSAFLEEYAPAAKRYVATGYMTVTEAIQSALQLSDNAAANLLLKEVGGPPLLTKYFRSLGDKVSRLDRIEPTLNTNTPGDERDTTTPMSMAQTVSKLIFGDTLTYKSKGQLRRLLIGNQTGDKTIRAGLPDSWVTGDKTGSCANGGRNDVAFFITTAGKKYVLSVYTNAPELQGEERALLIASVAKLARQYVVH 283
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.eeeeeeee....eeeee.....ee.hhhhhhhhhhhhhhhhhh.......eee.hhhhh...hhhhhhhh...eeehhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee.....eeeeeeeee....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eoe B  21 DFEHAISDLEAHNQAKIGVALVSENGNLIQGYRANERFAMCSTFKLPLAALVLSRIDAGEENPERKLHYDSAFLEEYAPAAKRYVATGYMTVTEAIQSALQLSDNAAANLLLKEVGGPPLLTKYFRSLGDKVSRLDRIEPTLNTNTPGDERDTTTPMSMAQTVSKLIFGDTLTYKSKGQLRRLLIGNQTGDKTIRAGLPDSWVTGDKTGSCANGGRNDVAFFITTAGKKYVLSVYTNAPELQGEERALLIASVAKLARQYV 281
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

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