4MWR - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   ANHUI N9-ZANAMIVIR

Authors :   Y. Wu, J. X. Qi, F. Gao, G. F. Gao

Date :   25 Sep 13 (Deposition) - 20 Nov 13 (Release) - 21 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   6-Bladed Beta-Propeller, Hydrolase, Glycosylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Wu, Y. H. Bi, C. J. Vavricka, X. M. Sun, Y. F. Zhang, F. Gao, M. Zhao, H. X. Xiao, C. F. Qin, J. H. He, W. J. Liu, J. H. Yan, J. X. Qi, G. F. Gao
Characterization Of Two Distinct Neuraminidases From Avian-Origin Human-Infecting H7N9 Influenza Viruses
Cell Res. V. 23 1347 2013
PubMed-ID: 24165891 | Reference-DOI: 10.1038/CR.2013.144

Molecule 1 - NEURAMINIDASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 78-465
	Gene	:	NA
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	11320
	Strain	:	A/ANHUI/1-BALF_RG1/2013(H7N9)

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 13)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CA	1	Ligand/Ion	CALCIUM ION
3	MAN	6	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	ZMR	1	Ligand/Ion	ZANAMIVIR

Biological Unit 1 (4, 48)

No.	Name	Count	Type	Full Name
1	BMA	4	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	24	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	16	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	ZMR	4	Ligand/Ion	ZANAMIVIR

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:295 , GLY A:299 , ASP A:326 , ASN A:348 , HOH A:615 , HOH A:638	BINDING SITE FOR RESIDUE CA A 512
2	AC2	SOFTWARE	ARG A:119 , GLU A:120 , ASP A:152 , ARG A:153 , ARG A:157 , TRP A:180 , ILE A:224 , ARG A:226 , GLU A:229 , ALA A:248 , GLU A:278 , GLU A:279 , ARG A:294 , ARG A:372 , TYR A:406 , HOH A:611 , HOH A:673 , HOH A:701 , HOH A:975 , HOH A:1019 , HOH A:1128	BINDING SITE FOR RESIDUE ZMR A 513
3	AC3	SOFTWARE	ASN A:84 , PHE A:85 , ASN A:87 , ASN A:236 , HOH A:918 , HOH A:1049 , HOH A:1053	BINDING SITE FOR MONO-SACCHARIDE NAG A 501 BOUND TO ASN A 87
4	AC4	SOFTWARE	ASN A:147 , TRP A:439	BINDING SITE FOR MONO-SACCHARIDE NAG A 502 BOUND TO ASN A 147
5	AC5	SOFTWARE	ASN A:201 , ASN A:202 , ARG A:329 , ASN A:331 , ASP A:332 , ARG A:365 , ILE A:367 , THR A:369 , GLU A:376 , LEU A:378 , PRO A:391 , ILE A:392 , GLN A:393 , GLY A:394 , LEU A:455 , GLY A:456 , GLN A:457 , HOH A:634 , HOH A:654 , HOH A:667 , HOH A:682 , HOH A:742 , HOH A:796 , HOH A:804 , HOH A:812 , HOH A:824 , HOH A:844 , HOH A:845 , HOH A:861 , HOH A:882 , HOH A:884 , HOH A:899 , HOH A:904 , HOH A:907 , HOH A:909 , HOH A:974 , HOH A:993 , HOH A:999 , HOH A:1007 , HOH A:1047 , HOH A:1055 , HOH A:1072 , HOH A:1080	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 202 RESIDUES 503 TO 511

Asymmetric Unit

No.	Residues
1	A:93	-	A:419
2	A:125	-	A:130
3	A:177	-	A:195
4	A:185	-	A:232
5	A:234	-	A:239
6	A:280	-	A:293
7	A:282	-	A:291
8	A:320	-	A:338
9	A:423	-	A:449

Asymmetric Unit

No.	Residues
1	Asn A:327	-	Pro A:328
2	Arg A:432	-	Pro A:433

(no "SAP(SNP)/Variant" information available for 4MWR)

(no "PROSITE Motif" information available for 4MWR)

(no "Exon" information available for 4MWR)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4mwra_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee....eeeeeee.hhhhhhh....eeeeeeeeeee..eeeeeeeeeeee..hhhhh..........eeeeee..........eeeee..eeeeee....eeeeeee......eeeeee..eeeeeee....................eeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeeee....eeeeee...................................ee.hhhh.eeee.......eeeeeee.............eeeeeeeeeee...eeeee.......ee.eeeeeeeeee.........eeeeeeeeeee.............hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mwr A  83 RNFNNLTKGLCTINSWHIYGKDNAVRIGESSDVLVTREPYVSCDPDECRFYALSQGTTIRGKHSNGTIHDRSQYRALISWPLSSPPTVYNSRVECIGWSSTSCHDGKSRMSICISGPNNNASAVVWYNRRPVAEINTWARNILRTQESECVCHNGVCPVVFTDGSATGPADTRIYYFKEGKILKWESLTGTAKHIEECSCYGERTGITCTCRDNWQGSNRPVIQIDPVAMTHTSQYICSPVLTDNPRPNDPNIGKCNDPYPGNNNNGVKGFSYLDGANTWLGRTISTASRSGYEMLKVPNALTDDRSKPIQGQTIVLNADWSGYSGSFMDYWAEGDCYRACFYVELIRGRPKEDKVWWTSNSIVSMCSSTEFLGQWNWPDGAKIEYFL 470
                                    92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: Sialidases (238)

Family: Sialidases (neuraminidases) (178)

Protein domain: automated matches (38)

Influenza a virus [TaxId: 1329890] (5)

d4mwra_

(no "CATH Domain" information available for 4MWR)

(no "Pfam Domain" information available for 4MWR)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4MWR)

Asymmetric Unit
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	Cis Peptide Bonds
		Arg A:432 - Pro A:433	[ RasMol ]
		Asn A:327 - Pro A:328	[ RasMol ]

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	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	4mwr
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	A0A024E3Q2_9 \| A0A024E3Q2
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	A0A024E3Q2_9 \| A0A024E3Q2	:	4mwj 4mwq 4mwu 4mwv

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 13)

Sites (5, 5)

SS Bonds (9, 9)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

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