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(-) Description

Title :  CRYSTAL STRUCTURE OF PLU4264 PROTEIN FROM PHOTORHABDUS LUMINESCENS
 
Authors :  K. Michalska, H. Li, R. Jedrzejczak, G. Babnigg, C. A. Bingman, R. Yenna S. Weerth, M. G. Thomas, G. N. Phillips Jr. , A. Joachimiak, Midwest C Structural Genomics (Mcsg), Enzyme Discovery For Natural Pro Biosynthesis (Natpro)
Date :  23 Sep 13  (Deposition) - 02 Oct 13  (Release) - 04 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro, Cupin, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. S. Weerth, K. Michalska, C. A. Bingman, R. M. Yennamalli, H. Li, R. Jedrzejczak, F. Wang, G. Babnigg, A. Joachimiak, M. G. Thomas, G. N. Phillips
Structure Of A Cupin Protein Plu4264 From Photorhabdus Luminescens Subsp. Laumondii Tto1 At 1. 35 Angstrom Resolution.
Proteins V. 83 383 2015
PubMed-ID: 25354690  |  Reference-DOI: 10.1002/PROT.24705

(-) Compounds

Molecule 1 - PLU4264
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG81
    Expression System Strain: BL21(DE3) GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PLU4264
    Organism Scientific: PHOTORHABDUS LUMINESCENS SUBSP. LAUMONDII
    Organism Taxid: 243265
    Strain: TT01

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2NA1Ligand/IonSODIUM ION
3NI2Ligand/IonNICKEL (II) ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:50 , HIS A:52 , GLU A:56 , HIS A:90 , HOH A:363 , HOH A:415BINDING SITE FOR RESIDUE NI A 201
2AC2SOFTWAREHOH A:315 , HOH A:334 , ASP B:11 , HOH B:333 , HOH B:342 , HOH B:395BINDING SITE FOR RESIDUE NA A 202
3AC3SOFTWAREHIS B:50 , HIS B:52 , GLU B:56 , HIS B:90 , HOH B:409 , HOH B:428BINDING SITE FOR RESIDUE NI B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MV2)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:25 -Pro A:26
2Leu B:25 -Pro B:26

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MV2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MV2)

(-) Exons   (0, 0)

(no "Exon" information available for 4MV2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..hhhhheee..eeeee...........eeeeeee...ee........eeeeeeee.eeeeee..eeeeee...eeee.....eeeee.....eeeeeeeehhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mv2 A   2 mNIIRKmDWDSmVHEYDLDGSRLLPWEGLNTPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIWWDKESTLNFLTRLEQD 122
                            |     | 11 |      21        31        41        51        61        71        81        91       101       111       121 
                            |     8-MSE|                                                                                                             
                            2-MSE     13-MSE                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:120
                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee.......eee..eeeee...........eeeeeee...ee........eeeeeeee.eeeeee..eeeeee...eeee.....eeeee.....eeeeeeeehhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mv2 B   2 mNIIRKmDWDSmVHEYDLDGSRLLPWEGLNTPFGGAWCIVRPETKSFRHSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIWWDKESTLNFLTRLEQ 121
                            |     | 11 |      21        31        41        51        61        71        81        91       101       111       121
                            2-MSE 8-MSE|                                                                                                            
                                      13-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MV2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MV2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MV2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4MV2)

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