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(-) Description

Title :  THE 4TH AND 5TH C-TERMINAL DOMAINS OF FACTOR H RELATED PROTEIN 1
 
Authors :  A. Bhattacharjee, A. Goldman, R. Kolodziejczyk, T. S. Jokiranta
Date :  21 Sep 13  (Deposition) - 18 Feb 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sushi Domains, Complement Alternative Pathway, Factor H Related Proteins, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Bhattacharjee, S. Reuter, E. Trojnar, R. Kolodziejczyk, H. Seeberger, S. Hyvarinen, B. Uzonyi, A. Szilagyi, Z. Prohaszka, A. Goldman, M. Jozsi, T. S. Jokiranta
The Major Autoantibody Epitope On Factor H In Atypical Hemolytic Uremic Syndrome Is Structurally Different From It Homologous Site In Factor H-Related Protein 1, Supporting A Novel Model For Induction Of Autoimmunity In This Disease.
J. Biol. Chem. V. 290 9500 2015
PubMed-ID: 25659429  |  Reference-DOI: 10.1074/JBC.M114.630871

(-) Compounds

Molecule 1 - COMPLEMENT FACTOR H-RELATED PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Taxid: 4922
    Fragment: SUSHI DOMAINS 4 AND 5
    Gene: CFHR1, CFHL, CFHL1, CFHL1P, CFHR1P, FHR1, HFL1, HFL2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FHR-1, H FACTOR-LIKE PROTEIN 1, H-FACTOR-LIKE 1, H36

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:213 , ILE A:219BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWAREPRO B:213 , ILE B:219 , PRO B:223BINDING SITE FOR RESIDUE SO4 B 401
3AC3SOFTWAREASN B:246 , GLU B:294BINDING SITE FOR RESIDUE SO4 B 402
4AC4SOFTWAREGLU B:258 , HIS B:311 , ARG B:314 , THR B:316BINDING SITE FOR RESIDUE SO4 B 403
5AC5SOFTWAREARG B:252 , SER B:257 , GLU B:258 , GLY B:293 , GLU B:294 , SER B:295 , ARG B:314BINDING SITE FOR RESIDUE SO4 B 404
6AC6SOFTWARETHR A:205 , GLY A:206 , LYS A:207 , ARG B:270BINDING SITE FOR RESIDUE SO4 B 405
7AC7SOFTWAREGLU A:274 , THR B:205 , GLY B:206 , LYS B:207BINDING SITE FOR RESIDUE SO4 B 406

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:208 -A:251
2A:237 -A:262
3A:266 -A:317
4A:300 -A:327
5B:208 -B:251
6B:237 -B:262
7B:266 -B:317
8B:300 -B:327

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:308 -Arg A:309

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MUC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MUC)

(-) Exons   (0, 0)

(no "Exon" information available for 4MUC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhh.eee.hhhh...ee....eeeeee.............eeeee..ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 4muc A 205 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYLRTGESAEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTC 327
                                   214       224       234       244       254       264       274       284       294       304       314       324   


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee............eeeeee....eee...eeeee..ee....eee..ee.hhhhhhhh.eee........ee....eeeeee....ee.......eee..........ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4muc B 205 TGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYLRTGESAEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAK 329
                                   214       224       234       244       254       264       274       284       294       304       314       324
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MUC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MUC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MUC)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ser A:308 - Arg A:309   [ RasMol ]  
 

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 Related Entries

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        FHR1_HUMAN | Q03591: 3rj3 3zd2

(-) Related Entries Specified in the PDB File

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