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(-) Description

Title :  CRYSTAL STRUCTURE OF COMJ, INHIBITOR OF THE DNA DEGRADING ACTIVITY OF NUCA, FROM BACILLUS SUBTILIS
 
Authors :  C. Chang, J. Mack, S. Clancy, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  16 Sep 13  (Deposition) - 09 Oct 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (1x),B (1x)
Biol. Unit 4:  C (1x),D (1x)
Keywords :  Inhibitor Of Nuca, Competence Protein J, Midwest Center For Structural Genomics, Mcsg, Psi-Biology, Hydrolase Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, J. Mack, S. Clancy, A. Joachimiak
Crystal Structure Of Comj, Inhibitor Of The Dna Degrading Activity Of Nuca, From Bacillus Subtilis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA-ENTRY NUCLEASE INHIBITOR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG73
    Expression System Strain: BL21(DE3) PGROW7-K
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NIN, COMJ, BSU03420
    Organism Scientific: BACILLUS SUBTILIS SUBSP. SUBTILIS
    Organism Taxid: 224308
    Strain: 168
    Synonym: COMPETENCE PROTEIN J

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD
Biological Unit 3 (1x): A (1x)B (1x)  
Biological Unit 4 (1x):   C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4MQD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MQD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MQD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MQD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MQD)

(-) Exons   (0, 0)

(no "Exon" information available for 4MQD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeee....eeeeee..........hhhhhhhheeee..eeeee.....eeeeeeee..........eeeeeeeee....eeee......eee....eeeeeeeeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mqd A   0 AmIKSWKPQELSISYHQFTVFQKDSTPPVmDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESImSKRLSFDLPKGDYQLTCWTVPAEmSDLHADTYIIDAVSV 132
                             |       9        19        29        39        49        59        69        79        89   |    99       109       119       129   
                             |                          29-MSE                                                          93-MSE                 117-MSE           
                             1-MSE                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..ee...eeee....eeeeee..........hhhhhhhheeee..eeeee.....eeeeeeee.......ee.eeeeeeeee....eeee......eee....eeeeeeeeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mqd B   1 mIKSWKPQELSISYHQFTVFQKDSTPPVmDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESImSKRLSFDLPKGDYQLTCWTVPAEmSDLHADTYIIDAVSV 132
                            |       10        20        30        40        50        60        70        80        90  |    100       110      |120       130  
                            1-MSE                      29-MSE                                                          93-MSE                 117-MSE           


Chain C from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee..eeee....eeeeee..........hhhhhhhheeee..eeeee.....eeeeeeee..........eeeeeeeee....eeee......eee....eeeeeeeeee..........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mqd C   1 mIKSWKPQELSISYHQFTVFQKDSTPPVmDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESImSKRLSFDLPKGDYQLTCWTVPAEmSDLHADTYIIDAVSV 132
                            |       10        20        30        40        50        60        70        80        90  |    100       110      |120       130  
                            1-MSE                      29-MSE                                                          93-MSE                 117-MSE           


Chain D from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...eeee....eeeeee..........hhhhhhhheeee..eeeee.....eeeeeeee.......ee.eeeeeeeee....eeee......eee....eeeeeeeeeehhhhh.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mqd D   0 AmIKSWKPQELSISYHQFTVFQKDSTPPVmDWTDEAIEKGYAAADGAISFEAQRNTKAFILFRLNSSETVNSYEKKVTVPFHVTENGIHIESImSKRLSFDLPKGDYQLTCWTVPAEmSDLHADTYIIDAVSV 132
                             |       9        19        29        39        49        59        69        79        89   |    99       109       119       129   
                             1-MSE                      29-MSE                                                          93-MSE                 117-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MQD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MQD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MQD)

(-) Gene Ontology  (3, 3)

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