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(-) Description

Title :  CRYSTAL STRUCTURE OF PARKIA BIGLOBOSA SEED LECTIN (PBL) IN COMPLEX WITH METHYL ALPHA D-MANNOPYRANOSIDE
 
Authors :  C. S. Teixeira, B. A. M. Rocha, H. C. Silva, A. U. Bari, I. L. Barroso-Neto M. Q. Santiago, C. S. Nagano, K. S. Nascimento, H. Debray, P. Delatorre B. S. Cavada
Date :  14 Sep 13  (Deposition) - 17 Dec 14  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Beta-Prism Domain, Lectin, Carbohydrate Binding Protein, Protein Bodies Of Seeds, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. S. Teixeira, B. A. M. Rocha, H. C. Silva, A. U. Bari, I. T. Barroso-Neto, M. Q. Santiago, C. S. Nagano, K. S. Nascimento, H. Debray, P. Delatorre, B. S. Cavada
Crystal Structure Of Parkia Biglobosa Seed Lectin (Pbl) In Complex With Methyl Alpha D-Mannopyranoside
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PARKIA BIGLOBOSA LECTIN (PBL)
    Chains: A
    Organism Scientific: PARKIA BIGLOBOSA
    Organism Taxid: 889930
    Other Details: SEEDS

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1MMA3Ligand/IonO1-METHYL-MANNOSE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MMA6Ligand/IonO1-METHYL-MANNOSE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:15 , GLY A:16 , GLY A:136 , TYR A:137 , TYR A:138 , ASP A:140 , ASN A:221BINDING SITE FOR RESIDUE MMA A 501
2AC2SOFTWAREGLY A:309 , GLY A:310 , GLY A:430 , ASP A:431 , TYR A:432 , ASP A:434BINDING SITE FOR RESIDUE MMA A 502
3AC3SOFTWAREALA A:163 , GLY A:164 , ASP A:165 , GLY A:281 , TYR A:282 , TYR A:283 , ASP A:285 , HOH A:686BINDING SITE FOR RESIDUE MMA A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MQ0)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:9 -Pro A:10
2Trp A:74 -Pro A:75
3Gly A:108 -Pro A:109
4Gly A:157 -Pro A:158
5Gly A:254 -Pro A:255
6Gly A:303 -Pro A:304
7Trp A:366 -Pro A:367
8Gly A:403 -Pro A:404

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MQ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MQ0)

(-) Exons   (0, 0)

(no "Exon" information available for 4MQ0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eeeeee....eeeeeeee...eeeeeeee........ee....hhhhhheeeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eeee...ee.eeeeeeeeee...eeeeeeeeee.....eeeeeee.....eeeeee....eeeeeeee...eeeeeeee..................eeeee.......eeeeeeeeeee..eeeeeeeeeee...eeeeee....eee...ee.eeeeeeeeee...eeeeeeeeee....eeeeeee....eeeeee....eeeeeeee...eeeeeeee........ee........eeeeee.......eeeeeeeeeeee...eeeeeeeeeeee...eeeeee....eee......eeeeeeeeee...eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mq0 A   4 GMISVGPWGGSGGDHWSFKANHAITEILIHVKDNIKSISFKDAGGDISGTFGGKDPRENKKGEEKKIGIRWPTEYLKSISGSYGDYNGILVIRSLSFITNLTTYGPFGSTSGGESFSIPIADSVVVGFHGRAGYYLDALGIFVQPVPHRTISFGPWGGPAGDDAFNFKVGSWIKDIIVYADATINSIAFKDADGHCEKFGGQDPNDIGVEEKVEIDGNLEHLTSISGTYGNYKGFEVLTSLSFITNVTKHGPFGIASGTSFSRPIEGSLVTGFHGKGGYYLDSIGIYVKPRDGSISIGPWGGSGGDPWSYTANEGINQIIIYAGSNIKSIAFKDTSGLDSATFGGVNPKDTGEKNTVSIKWPSEYLTSIDGTYGQYKFKDVFTTVTSLSFTTNLATYGPFGKASLTSFSIPIHNNMVVGFHGRAGDYLDAIGIFVKPD 443
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293 ||    305       315       325       335       345       355       365       375       385       395       405       415       425       435        
                                                                                                                                                                                                                                                                                                                             295|                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                              298
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MQ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MQ0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MQ0)

(-) Gene Ontology  (0, 0)

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  4mq0
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