4MLC - JenaLib

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN FROMDESULFITOBACTERIUM HAFNIENSE

Authors :   Y. Kim, G. Chhor, M. Endres, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)

Date :   06 Sep 13 (Deposition) - 18 Sep 13 (Release) - 18 Sep 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.71

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (4x)

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Sbp (Substrate-Binding Protein), Alpha-Beta-Alpha Sandwich, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, G. Chhor, M. Endres, A. Joachimiak
Abc Transporter Substrate-Binding Protein Fromdesulfitobacterium Hafniense
To Be Published
PubMed: search

Molecule 1 - EXTRACELLULAR LIGAND-BINDING RECEPTOR
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG68
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	DHAF_0110
	Organism Scientific	:	DESULFITOBACTERIUM HAFNIENSE
	Organism Taxid	:	272564
	Strain	:	DCB-2

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A
Biological Unit 3 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 9)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	7	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 18)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	14	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 36)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	8	Ligand/Ion	SULFATE ION

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:140 , GLY A:167 , ARG A:313 , HOH A:514 , HOH A:515 , HOH A:516	BINDING SITE FOR RESIDUE CA A 401
2	AC2	SOFTWARE	ARG A:79 , ASN A:80 , SER A:81 , ALA A:102 , SER A:103 , THR A:104 , HOH A:511	BINDING SITE FOR RESIDUE SO4 A 402
3	AC3	SOFTWARE	ASP A:110 , ASN A:157 , ASP A:161 , HOH A:535	BINDING SITE FOR RESIDUE SO4 A 403

(no "SS Bond" information available for 4MLC)

Asymmetric Unit

No.	Residues
1	Gly A:77	-	His A:78
2	Gly A:316	-	Pro A:317

(no "SAP(SNP)/Variant" information available for 4MLC)

(no "PROSITE Motif" information available for 4MLC)

(no "Exon" information available for 4MLC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4mlca_ A: automated matches                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.......hhhhhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh.eeee....hhhhhh.....eee...hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhh....eee.hhhh.hhhhh..eeeee......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh.eee..eee............eeeeeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mlc A   6 EEIFIGVAWPFASLDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVmLSPASTSPDLTDHGYIHVFRNIPSDQEIARQLAIYLAEQGHERmVIYYTDDSYGNGLANAFEDYARAQGITIVDRFNYYGNLKDLERLYDKWQAFGmDGIFIAKTATGGGTEFLVDAKSVGIEVPLIAGNSWDAGmTAEGLLVGSFFNPQRPDSRTQDFVEAFRREYGQPPTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGPWEGVmGmHRFDGRGDDIGDLVVLKKmKDGRFEYL 351
                                    15        25        35        45        55        65        75        85        95  |    105       115       125       135      |145       155       165       175       185       195       205       215       225      |245       255       265       275       285       295       305       315      |325       335       345      
                                                                                                                       98-MSE                                     142-MSE                                              195-MSE                              232||                                                                           322-MSE              343-MSE    
                                                                                                                                                                                                                                                             243|                                                                             324-MSE                       
                                                                                                                                                                                                                                                              244-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like I (179)

Superfamily: Periplasmic binding protein-like I (179)

Family: automated matches (65)

Protein domain: automated matches (65)

Desulfitobacterium hafniense [TaxId: 272564] (1)

d4mlca_

(no "CATH Domain" information available for 4MLC)

(no "Pfam Domain" information available for 4MLC)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Sites
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		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:316 - Pro A:317	[ RasMol ]
		Gly A:77 - His A:78	[ RasMol ]

Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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