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(-) Description

Title :  X-RAY STRUCTURE OF COME D58A REC DOMAIN FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  M. Boudes, D. Sanchez, D. Durand, M. Graille, H. Van Tilbeurgh, S. Quev Cheruel
Date :  06 Sep 13  (Deposition) - 19 Feb 14  (Release) - 18 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Protein Dimer, Rec, Response Regulator, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Boudes, D. Sanchez, M. Graille, H. Van Tilbeurgh, D. Durand, S. Quevillon-Cheruel
Structural Insights Into The Dimerization Of The Response Regulator Come From Streptococcus Pneumoniae.
Nucleic Acids Res. V. 42 5302 2014
PubMed-ID: 24500202  |  Reference-DOI: 10.1093/NAR/GKU110

(-) Compounds

Molecule 1 - RESPONSE REGULATOR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21-GOLD (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: REC DOMAIN (UNP RESIDUES 1-137)
    Gene: COME, SPR2041
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 171101
    Strain: ATCC BAA-255 / R6

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ML3)

(-) Sites  (0, 0)

(no "Site" information available for 4ML3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ML3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn C:52 -Gln C:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ML3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ML3)

(-) Exons   (0, 0)

(no "Exon" information available for 4ML3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhhhh....eeeee............eeee........hhhhhhhhhhhhhh.....eeee.................eeee...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ml3 A   1 MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIEQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSML 132
                                    10        20        30        40      ||55        65        75        85        95       105       115       125       
                                                                         47|                                                                               
                                                                          53                                                                               


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhhhh....eeeee..hhhhhh.....eeee.........hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh.....eeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ml3 B   1 MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSML 132
                                    10        20        30        40      ||54        64        74        84        94       104       114       124        
                                                                         47|                                                                                
                                                                          52                                                                                


Chain C from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhh..eeee.........hhhhhhhhhhhhh...eeeeee.hhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ml3 C   1 MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENNQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSML 132
                                    10        20        30        40       |53        63        73        83        93       103       113       123         
                                                                          48|                                                                                
                                                                           52                                                                                


Chain D from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.....hhhhhhhhhhhhhhhh.......ee..hhhhhhh......eeee..hhhhh..hhhhhhhhhhhhh...eeeee..hhhhhh..........eee....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ml3 D   1 MKVLILEDVIEHQVRLERILDEISKESNIPISYKTTGKVREFEEYIENDEQLYFLAIDIHGIEKKGFEVAQLIRHYNPYAIIVFITSRSEFATLTYKYQVSALDFVDKDINDEMFKKRIEQNIFYTKSMLL 133
                                    10        20        30        40        50|       62        72        82        92       102       112       122       132 
                                                                            50|                                                                                
                                                                             53
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ML3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ML3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ML3)

(-) Gene Ontology  (5, 5)

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  Cis Peptide Bonds
    Asn C:52 - Gln C:53   [ RasMol ]  
 
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 Related Entries

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        Q8DMW5_STRR6 | Q8DMW5: 4mld

(-) Related Entries Specified in the PDB File

4b1n FULL LENGHT PROTEIN
4mld