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(-) Description

Title :  CRYSTAL STRUCTURE OF CHLOROPLASTIC TRIOSEPHOSPHATE ISOMERASE FROM CHLAMYDOMONAS REINHARDTII AT 1.1 A OF RESOLUTION
 
Authors :  S. Fermani, C. Sciabolini, M. Zaffagnini, S. D. Lemaire
Date :  05 Sep 13  (Deposition) - 01 Jan 14  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Tim Barrel, Isomerase, Chloroplast (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zaffagnini, L. Michelet, C. Sciabolini, N. Di Giacinto, S. Morisse, C. H. Marchand, P. Trost, S. Fermani, S. D. Lemaire
High-Resolution Crystal Structure And Redox Properties Of Chloroplastic Triosephosphate Isomerase From Chlamydomonas Reinhardtii.
Mol Plant V. 7 101 2014
PubMed-ID: 24157611  |  Reference-DOI: 10.1093/MP/SST139

(-) Compounds

Molecule 1 - TRIOSEPHOSPHATE ISOMERASE
    Chains: A
    EC Number: 5.3.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 13-282
    Gene: TIM, TPIC, CHLREDRAFT_26265
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD5Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD10Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:13 , SER A:213 , GLY A:234 , GLY A:235 , HOH A:465 , HOH A:473 , HOH A:559 , HOH A:638BINDING SITE FOR RESIDUE MRD A 301
2AC2SOFTWARETRP A:67 , LEU A:101 , PHE A:102 , VAL A:108 , HOH A:452BINDING SITE FOR RESIDUE MRD A 302
3AC3SOFTWAREGLY A:137 , SER A:138 , VAL A:139 , PHE A:140 , MRD A:304 , HOH A:440 , HOH A:468 , HOH A:589 , HOH A:633BINDING SITE FOR RESIDUE MPD A 303
4AC4SOFTWAREARG A:134 , PHE A:140 , GLU A:185 , MPD A:303BINDING SITE FOR RESIDUE MRD A 304
5AC5SOFTWARESER A:105 , ASN A:106 , GLU A:107 , HOH A:487 , HOH A:571 , HOH A:572BINDING SITE FOR RESIDUE MRD A 305
6AC6SOFTWARELEU A:131 , ARG A:134 , TRP A:170 , GLN A:182 , HOH A:426 , HOH A:438BINDING SITE FOR RESIDUE MRD A 306

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MKN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MKN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MKN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MKN)

(-) Exons   (0, 0)

(no "Exon" information available for 4MKN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains d4mkna_ A: automated matches                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhh.....eeee...............hhhhhhhhh..eeee.hhhhhhhh..hhhhhhhhhhhhhhh..eeeeee..hhhhhhh.hhhhhhhhhhhhhhhhh.....eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhheeee.......hhhhhhh.....eeeehhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mkn A   2 SSAKFFVGGNWKCNGSVANVAKLVDELNAGTIPRGVDVVVAPPFIYIDYVMQHLDRDKYQLSAQNAWIGGNGAFTGEVSAEQLTDFGVPWVILGHSERRSLFGESNEVVAKKTSHALAAGLGVIACIGETLEQRNSGSVFKVLDAQMDALVDEVKDWTKVVLAYEPVWAIGTGVVASPEQAQEVHAYLRQYCAKKLGAAVADKLRIIYGGSVSDTNCKDLSKQEDIDGFLVGGASLKGAAFVTICNAAGPKAKP 256
                                    11        21        31        41        51     |  60        70        80        90       100       110       120       130       140       150 ||    162       172       182       192       202       212       222       232       242       252    
                                                                                 56A                                                                                             152|                                                                                                     
                                                                                                                                                                                  155
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MKN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MKN)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)

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