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(-) Description

Title :  CRYSTAL STRUCTURE OF ACHETA DOMESTICUS DENSOVIRUS
 
Authors :  G. Meng, M. G. Rossmann
Date :  28 Aug 13  (Deposition) - 30 Oct 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A,C  (60x)
Keywords :  Virus, Jelly-Roll, Dnv, Virus-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Meng, X. Zhang, P. Plevka, Q. Yu, P. Tijssen, M. G. Rossmann
The Structure And Host Entry Of An Invertebrate Parvovirus.
J. Virol. V. 87 12523 2013
PubMed-ID: 24027306  |  Reference-DOI: 10.1128/JVI.01822-13

(-) Compounds

Molecule 1 - STRUCTURAL PROTEIN VP2
    Chains: A
    Organism Scientific: ACHETA DOMESTICA DENSOVIRUS
    Organism Taxid: 185639
 
Molecule 2 - DNA (5'-D(P*TP*TP*T)-3')
    Chains: C
    Organism Scientific: ACHETA DOMESTICUS
    Organism Taxid: 6997
    Other Details: DNV

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (60x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4MGU)

(-) Sites  (0, 0)

(no "Site" information available for 4MGU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MGU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:280 -Ala A:281
2Tyr A:388 -Pro A:389

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MGU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MGU)

(-) Exons   (0, 0)

(no "Exon" information available for 4MGU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee..eee............eeee..........eeeee.........hhhhhh................eeee.....eee............eeee..................................hhhhh..........................eeeee...........hhhhh..............eeee.........................................eee..eeee........ee............................eeee...ee...........ee.eee.....eee..eee...................ee.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mgu A  23 IPIPRPITTPHNNFIIFNKVHRFLTYGLANVVIPITRTVNDVTYVDNFVITSLGRLPVDRPFLYMNPNEFAQLPPGSCIEECNVRVTAFTPRIAFQATLNQNQFILHATGLNIKTQGVDVRPKEFQANEPMVVSSIDELGADENLFEDYVKEKSVPNHVPRHQFGIPYPLKNYFALVLQQNGTADNPGYECLQSHVNEIRCNGPPGEIVEYNYKPQLGLIKKAIPAVYTGVPSAVGGNSTLSCPAGAGNSQYRTADFTMTNNLRGDSETFKDTVVSNWTIATQIEKSQILHAGAFPSYTPRAQPSLHIGVKPVHALTTANLDDNLNNANFTDTQAYFIVEAACKVRLQYPSIRPLFNGPNTIPDNQIYSSSTLQYTHAV 418
                                    32        42        52        62        72        82        92       102       112     ||130       140       150       160       170||     182 ||    196       206       216       226       236       246       256       266       276       286       296 ||    307      |319       329       339       349       359       369       379       389       399       409         
                                                                                                                         118|                                         171|       184|                                                                                                          298|           314|                                                                                                     
                                                                                                                          127                                          174        189                                                                                                           300            317                                                                                                     


Chain C from PDB  Type:DNA  Length:3
                                   
                 4mgu C   6 TTT   8
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MGU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MGU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MGU)

(-) Gene Ontology  (2, 2)

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  Cis Peptide Bonds
    Pro A:280 - Ala A:281   [ RasMol ]  
    Tyr A:388 - Pro A:389   [ RasMol ]  
 
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