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(-) Description

Title :  THE CRYSTAL STRUCTURE OF ACYLTRANSFERASE IN COMPLEX WITH DECANOYL-COA AND TEI PSEUDOAGLYCONE
 
Authors :  S. Y. Lyu, Y. C. Liu, C. Y. Chang, C. J. Huang, T. L. Li
Date :  28 Aug 13  (Deposition) - 03 Sep 14  (Release) - 10 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gnat, Acyltransferase, Acyl-Coa, Transferase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Y. Lyu, Y. C. Liu, C. Y. Chang, C. J. Huang, Y. H. Chiu, C. M. Huang, N. S. Hsu, K. H. Lin, C. J. Wu, M. D. Tsai, T. L. Li
Multiple Complexes Of Long Aliphatic N-Acyltransferases Lea To Synthesis Of 2, 6-Diacylated/2-Acyl-Substituted Glycopeptide Antibiotics, Effectively Killing Vancomycin-Resistant Enterococcus
J. Am. Chem. Soc. V. 136 10989 2014
PubMed-ID: 25095906  |  Reference-DOI: 10.1021/JA504125V

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TCP24
    Chains: A
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TCP24
    Mutation: YES
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867
    Synonym: ACYLTRANSFERASE
 
Molecule 2 - TEICOPLANIN PSEUDOAGLYCONE
    Chains: B
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (10, 14)

Asymmetric/Biological Unit (10, 14)
No.NameCountTypeFull Name
13FG2OTHER(2S)-AMINO(3,5-DIHYDROXYPHENYL)ETHANOIC ACID
23MY1Mod. Amino Acid3-CHLORO-D-TYROSINE
3COA1Ligand/IonCOENZYME A
4DKA1Ligand/IonDECANOIC ACID
5GCS1Ligand/IonD-GLUCOSAMINE
6GHP3OTHER(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
7MAN1Ligand/IonALPHA-D-MANNOSE
8NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
9OMY1Mod. Amino Acid(BETAR)-3-CHLORO-BETA-HYDROXY-L-TYROSINE
10SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:178 , VAL A:197 , GLU A:199 , GLY A:202 , PRO A:203 , LEU A:204 , SER A:236 , TRP A:237 , SER A:251 , ASN A:252 , ILE A:253 , PHE A:281 , VAL A:282 , SER A:297 , SER A:298 , LEU A:299 , HOH A:503 , HOH A:562 , HOH A:563 , HOH A:587 , HOH A:720 , GCS B:503 , DKA B:504BINDING SITE FOR RESIDUE COA A 401
2AC2SOFTWAREALA A:91 , LYS A:92 , ARG A:94 , HOH A:596BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREGLY A:186 , LYS A:187 , ASP A:188 , ARG A:222 , TRP A:233 , HOH A:617 , HOH A:711BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWAREMET A:161 , TRP A:163 , TRP A:164 , VAL A:197 , PHE A:281 , COA A:401 , HOH A:513 , 3MY B:398 , GHP B:400 , OMY B:402 , DKA B:504 , HOH B:602BINDING SITE FOR RESIDUE GCS B 503
5AC5SOFTWARELEU A:195 , ALA A:196 , VAL A:197 , SER A:235 , SER A:236 , MET A:238 , TRP A:260 , COA A:401 , GCS B:503BINDING SITE FOR RESIDUE DKA B 504
6AC6SOFTWARELYS A:92 , TYR A:167 , SER A:182 , ALA A:184 , THR A:185 , HIS A:192 , HOH A:547 , HOH A:713 , 3FG B:399 , GHP B:401 , OMY B:402 , HOH B:601 , HOH B:603 , HOH B:609BINDING SITE FOR CHAIN B OF RESIDUES 3FG B 403 AND MAN B 502
7AC7SOFTWARELYS A:92 , PRO A:93 , MET A:161 , TRP A:163 , TYR A:167 , SER A:276 , PHE A:281 , NAG B:501 , MAN B:502 , GCS B:503 , HOH B:609BINDING SITE FOR CHAIN B OF TEICOPLANIN PSEUDOAGLYCONE

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MFP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ghp B:401 -Omy B:402

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MFP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MFP)

(-) Exons   (0, 0)

(no "Exon" information available for 4MFP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.hhhhhhhhhhhhhhh.........hhhhhhhhhhhh..hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh..eeee..eeeeeee.....eeeeee........hhhhhhhhhhhhhhhhhhhh......eeeeeehhhhhhhhhh....hhhhhhhh..ee..........hhhhhhhhhhhh....hhhhh...hhhhhhhhhhhhh......eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mfp A   1 MDPETVRIALGLEERTAAWLTELDELGPPAEPVRLPRGEEARDLLRRLEVPELDAEEIVAAAPDPDRDPALWWLLERTHHAIVRHMGDHRAKPRGGPPLPYEGGAAARYFHVYVFLATVPAVRRFHAERGIPDEVGWETLTQLGELVAIHRRKYGQGGMNMQWWTTYHLRGILYRLGRLQFSLATGKDGTPHLGLAVPEWGGPLLPKAYDESLHRARPFFDRHFPEHGARVAWGSSWMLDPQLEEYLTEDSNIIQLARFWTLTDSAPEPGNADGDSSILEFVFRYNGQPLDELPQRSSLERAVIAHLKAGRHWHMRTGFVKLP 323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320   


Chain B from PDB  Type:OTHER/PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4mfp B 397 xyxxxyx 403
                            |||||||
                          397-GHP||
                           398-3MY|
                            399-3FG
                             400-GHP
                              401-GHP
                               402-OMY
                                403-3FG
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MFP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MFP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MFP)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q70AY4_ACTTI | Q70AY4: 4mfj 4mfk 4mfl 4mfq 4q36 4q38

(-) Related Entries Specified in the PDB File

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