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(-) Description

Title :  2.0 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF PUTATIVE CARBONIC ANHYDRASE FROM CLOSTRIDIUM DIFFICILE.
 
Authors :  G. Minasov, Z. Wawrzak, M. Kudritska, S. Grimshaw, K. Kwon, A. Savchenk W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  27 Aug 13  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D  (3x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Single-Stranded Left-Handed Beta-Helix, Gamma- Carbonic Anhydrase-Like, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, Z. Wawrzak, M. Kudritska, S. Grimshaw, K. Kwon, A. Savchenko, W. F. Anderson
2. 0 Angstrom Resolution Crystal Structure Of Putative Carbonic Anhydrase From Clostridium Difficile.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ACYLTRANSFERASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PUTATIVE CARBONIC ANHYDRASE
    Gene: CD630_27480
    Organism Scientific: CLOSTRIDIUM DIFFICILE
    Organism Taxid: 272563
    Strain: 630
    Synonym: PUTATIVE CARBONIC ANHYDRASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABC 
Biological Unit 2 (3x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION
2NI4Ligand/IonNICKEL (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NI-1Ligand/IonNICKEL (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2NI-1Ligand/IonNICKEL (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:39 , HOH A:310 , ASN B:39 , HOH B:310 , ASN C:39 , HOH C:302BINDING SITE FOR RESIDUE MG A 201
2AC2SOFTWAREHIS A:64 , HIS A:84 , HOH A:371 , HIS B:79 , HOH B:368BINDING SITE FOR RESIDUE NI A 202
3AC3SOFTWAREHIS B:64 , HIS B:84 , HIS C:79 , HOH C:347 , HOH C:355BINDING SITE FOR RESIDUE NI B 201
4AC4SOFTWAREHIS A:79 , HOH A:369 , HOH A:372 , HIS C:64 , HIS C:84BINDING SITE FOR RESIDUE NI C 201
5AC5SOFTWAREASN D:39 , HOH D:304BINDING SITE FOR RESIDUE MG D 201
6AC6SOFTWAREHIS D:64 , HIS D:79 , HIS D:84 , HOH D:378BINDING SITE FOR RESIDUE NI D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MFG)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:133 -Pro A:134
2Ser B:133 -Pro B:134
3Ser C:133 -Pro C:134
4Ser D:133 -Pro D:134

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MFG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MFG)

(-) Exons   (0, 0)

(no "Exon" information available for 4MFG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4mfga_ A: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee....eee....ee....eee..ee...eee....ee....ee...eee....ee.........eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mfg A  -2 SNAMIRDYLEDKPLIDESVFVAKSADVIGNVKIGKDSSIWYNAVVRGDEGPITIGENTNIQDCSIVHGDTETIIGNNVTVGHRSIVHGCKISDNVLIGMGSIILDNAEIGEYTLIGAGTLITSNKKFPPGVLIMGSPGKVVRELTEEDKKYIDESYEWYLEAAQNQKY 165
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157        


Chain B from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4mfgb_ B: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee....eee....ee....eee..ee....ee....ee....ee....ee....ee....ee...eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mfg B  -2 SNAMIRDYLEDKPLIDESVFVAKSADVIGNVKIGKDSSIWYNAVVRGDEGPITIGENTNIQDCSIVHGDTETIIGNNVTVGHRSIVHGCKISDNVLIGMGSIILDNAEIGEYTLIGAGTLITSNKKFPPGVLIMGSPGKVVRELTEEDKKYIDESYEWYLEAAQNQKY 165
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157        


Chain C from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4mfgc_ C: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee....eee....ee....eee..ee...eee....ee....ee...eee....ee.........eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mfg C  -2 SNAMIRDYLEDKPLIDESVFVAKSADVIGNVKIGKDSSIWYNAVVRGDEGPITIGENTNIQDCSIVHGDTETIIGNNVTVGHRSIVHGCKISDNVLIGMGSIILDNAEIGEYTLIGAGTLITSNKKFPPGVLIMGSPGKVVRELTEEDKKYIDESYEWYLEAAQNQKY 165
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157        


Chain D from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4mfgd_ D: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.ee....ee....eeeeeeee....ee....eeeeeeeeeee....ee....eee....eee....ee....eee..ee...eee....ee....ee...eee....ee.........eeee....eeeee.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mfg D  -2 SNAMIRDYLEDKPLIDESVFVAKSADVIGNVKIGKDSSIWYNAVVRGDEGPITIGENTNIQDCSIVHGDTETIIGNNVTVGHRSIVHGCKISDNVLIGMGSIILDNAEIGEYTLIGAGTLITSNKKFPPGVLIMGSPGKVVRELTEEDKKYIDESYEWYLEAAQNQKY 165
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MFG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MFG)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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