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(-) Description

Title :  CRYSTAL STRUCTURE OF A HPCH/HPAL ALDOLASE/CITRATE LYASE FAMILY PROTEIN FROM BURKHOLDERIA CENOCEPACIA J2315
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 Aug 13  (Deposition) - 04 Sep 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Aldolase, Citrate Lyase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Lukacs, J. W. Fairman, T. E. Edwards, D. Lorimer
Crystal Structure Of A Hpch/Hpal Aldolase/Citrate Lyase Family Protein From Burkholderia Cenocepacia J2315
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HPCH/HPAI ALDOLASE/CITRATE LYASE FAMILY PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BCEJ2315_04740, BCAL0476
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: J2315 / LMG 16656

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:76 , ASP A:184 , PHE A:221 , HOH A:441BINDING SITE FOR RESIDUE EDO A 301
2AC2SOFTWAREHOH B:467 , ARG C:76 , PHE C:221 , HOH C:522 , HOH C:535BINDING SITE FOR RESIDUE EDO C 301
3AC3SOFTWAREARG D:76 , GLN D:156 , PHE D:221 , MET F:131BINDING SITE FOR RESIDUE EDO D 301
4AC4SOFTWAREARG E:76 , PHE E:221 , HOH E:413BINDING SITE FOR RESIDUE EDO E 301
5AC5SOFTWAREARG F:76 , PHE F:221BINDING SITE FOR RESIDUE EDO F 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MF4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MF4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MF4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MF4)

(-) Exons   (0, 0)

(no "Exon" information available for 4MF4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mf4a_ A: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhh.................hhhhhhhh..hhhhhhhhhheeeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mf4 A   4 LTNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        


Chain B from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mf4b_ B: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhh.................hhhhhhhh..hhhhhhhhhheeeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mf4 B   4 LTNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        


Chain C from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mf4c_ C: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhh.................hhhhhhhh..hhhhhhhhhheeeeee.hhhhhhhhhhhhh.....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mf4 C   4 LTNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        


Chain D from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4mf4d_ D: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhh....eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhh.................hhhhhhhh..hhhhhhhhhheeeeee.hhhhhhhhhhhhhh....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mf4 D   4 LTNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253        


Chain E from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains d4mf4e_ E: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhheeeeee.hhhhhhhhhhhhhh....eeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mf4 E   5 TNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       


Chain F from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains d4mf4f_ F: automated matches                                                                                                                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eeeeee...hhhhhhhhh.....eeeee......hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeee....hhhhhhhhhhhhh................hhhhhhhh..hhhhhhhhhheeeee..hhhhhhhhhhhhhh..eeeeeehhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mf4 F   5 TNSLKQRLRDGDEPLYGLWLSLGSDSAAEALAHAGYDWLCIDMEHAPNDSRDVASQLRAIAAAHLPSEPVVRVPAREPWLVKRALDAGARTLMFPCIETPDDAAHAVRLTRFPSPESPDGLRGVAGMVRAAAFGMRRDYLQTANAQVAVIVQVESARGVDEVERIAATPGVDCLFVGPADLAASLGHLGDIRHPDVETAMARVLAAGKQAGVAVGIFAGDTAAARQYREAGYRLITVSADVSWLLRATRQALQEVRS 261
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MF4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MF4)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1dxe
4b5v RELATED ID: SSGCID-BUCEA.17460.A RELATED DB: TARGETTRACK