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(-) Description

Title :  CRYSTAL STRUCTURE OF THE NOVEL PROTEIN AND VIRULENCE FACTOR SHIP (Q99XU0) FROM STREPTOCOCCUS PYOGENES
 
Authors :  M. Wisniewska, L. Happonen, M. -I. Frick, L. Bjorck, W. Streicher, J. Ma M. Wikstrom
Date :  27 Aug 13  (Deposition) - 21 May 14  (Release) - 16 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Helix, Tetramer, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wisniewska, L. Happonen, F. Kahn, M. Varjosalo, L. Malmstrom, G. Rosenberger, C. Karlsson, G. Cazzamali, I. Pozdnyakova, I. M. Frick, L. Bjorck, W. Streicher, J. Malmstrom, M. Wikstrom
Functional And Structural Properties Of A Novel Protein And Virulence Factor (Protein Ship) In Streptococcus Pyogenes.
J. Biol. Chem. V. 289 18175 2014
PubMed-ID: 24825900  |  Reference-DOI: 10.1074/JBC.M114.565978

(-) Compounds

Molecule 1 - STREPTOCOCCAL HISTIDINE-RICH GLYCOPROTEIN INTERACTING PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: M5005_SPY1730, SPY_2034
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1314
    Strain: AP1
    Synonym: SHIP

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4MER)

(-) Sites  (0, 0)

(no "Site" information available for 4MER)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:65 -C:65
2B:65 -D:65

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:62 -Ile A:63
2Asp D:62 -Ile D:63

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MER)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MER)

(-) Exons   (0, 0)

(no "Exon" information available for 4MER)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  4mer A  1 SMKQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQPDIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM 98
                                    10        20        30        40        50        62        72        82        92      
                                                                                     59|                                    
                                                                                      62                                    


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  4mer B  1 SMKQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQPIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM 98
                                    10        20        30        40        50        63        73        83        93     
                                                                                     59|                                   
                                                                                      63                                   


Chain C from PDB  Type:PROTEIN  Length:88
                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  4mer C  3 KQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM 98
                                    12        22        32        42        52 ||     70        80        90        
                                                                              54|                                   
                                                                               63                                   


Chain D from PDB  Type:PROTEIN  Length:97
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  4mer D  1 SMKQDQLIVEKMEQTYEAFSPKLANLIEALDAFKEHYEEYATLRNFYSSDEWFRLANQPDDIPCGVLSEDLLFDMIGDHNQLLADILDLAPIMYKHM 98
                                    10        20        30        40        50        61        71        81        91       
                                                                                     59|                                     
                                                                                      61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MER)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MER)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MER)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Sites
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  Cis Peptide Bonds
    Asp A:62 - Ile A:63   [ RasMol ]  
    Asp D:62 - Ile D:63   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q99XU0_STRP1 | Q99XU0: 4pz1

(-) Related Entries Specified in the PDB File

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