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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RAT USP11 DUSP-UBL DOMAINS
 
Authors :  S. Harper, H. E. Gratton, I. Cornaciu, M. Oberer, D. J. Scott, J. Emsley,
Date :  27 Aug 13  (Deposition) - 07 May 14  (Release) - 28 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A (1x),B (1x)
Keywords :  Domain Present In Ubiquitin Specific Proteases (Dusp), Ubiquitin-Like Domain (Ubl), Du Finger, Ubiquitin Thiolesterase, Hydrolase, Deubiquitinating Enzyme (Dub), Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Harper, H. E. Gratton, I. Cornaciu, M. Oberer, D. J. Scott, J. Emsley I. Dreveny
Structure And Catalytic Regulatory Function Of Ubiquitin Specific Protease 11 N-Terminal And Ubiquitin-Like Domains.
Biochemistry V. 53 2966 2014
PubMed-ID: 24724799  |  Reference-DOI: 10.1021/BI500116X

(-) Compounds

Molecule 1 - UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 11
    Chains: A, B
    EC Number: 3.4.19.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET26B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: DUSP-UBL DOMAINS, UNP RESIDUES 19-237
    Gene: RCG_42884, USP11
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Strain: 10116

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4MEM)

(-) Sites  (0, 0)

(no "Site" information available for 4MEM)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:204 -B:204

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:197 -Gly A:198
2Glu B:197 -Gly B:198

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MEM)

(-) Exons   (0, 0)

(no "Exon" information available for 4MEM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhhh............hhhhh.................eeeeehhhhhhhhhhhh........eeeeeee..eeee....eeeeeee..eeeeeeeeee....hhhhhhhhhhhhh.......eeeeee.....eee.................eeeeee......hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mem A  26 AMPDLDQQWRQIGNGRERPLRAGESWFLVEKHWYKQWEAYVKGGDQDASTFPGSINNSGLFEDQISWHLRERLVEGDDYVLLPAPAWNYLVSWYGLKDDQPPIERKVIELPGIRKVEVYPIELLLVQHSDMETALTIQFSYSDSVDLVLQTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMETRNKDGTWPSAQL 237
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235  


Chain B from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.......eeeeeehhhhhhhhhhhhhh............hhhhh.................eeeeehhhhhhhhhhhh........eeeeeee..eeeee...eeeeeee..eeeeeeeeee....hhhhhhhhhhhhh.......eeeeee.....eee.................eeeeee......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4mem B  27 MPDLDQQWRQIGNGRERPLRAGESWFLVEKHWYKQWEAYVKGGDQDASTFPGSINNSGLFEDQISWHLRERLVEGDDYVLLPAPAWNYLVSWYGLKDDQPPIERKVIELPGIRKVEVYPIELLLVQHSDMETALTIQFSYSDSVDLVLQTAREQFLVEPQEDTRLWTKNSEGSLDRLCNTQITLLDACLETGQLVIMETRNKDGTWPSAQLEHHHH 242
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MEM)

(-) Gene Ontology  (11, 11)

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  Cis Peptide Bonds
    Glu A:197 - Gly A:198   [ RasMol ]  
    Glu B:197 - Gly B:198   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

4mel THE SAME DOMAINS FROM HUMAN USP11