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(-) Description

Title :  RSK2 T493M C-TERMINAL KINASE DOMAIN IN COMPLEX WITH 3-(3-(1H-PYRAZOL-4-YL)PHENYL)-2-CYANOACRYLAMIDE
 
Authors :  R. M. Miller, J. Taunton
Date :  13 Aug 13  (Deposition) - 22 Oct 14  (Release) - 26 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Phosphorylation, Covalent Inhibitor, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. London, R. M. Miller, S. Krishnan, K. Uchida, J. J. Irwin, O. Eidam, L. Gibold, P. Cimermancic, R. Bonnet, B. K. Shoichet, J. Taunton
Covalent Docking Of Large Libraries For The Discovery Of Chemical Probes.
Nat. Chem. Biol. V. 10 1066 2014
PubMed-ID: 25344815  |  Reference-DOI: 10.1038/NCHEMBIO.1666

(-) Compounds

Molecule 1 - RIBOSOMAL PROTEIN S6 KINASE ALPHA-3
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RSK2 C-TERMINAL KINASE DOMAIN, UNP RESIDUES 400-720
    Gene: RPS6KA3, MAPKAPK1B, RPS6KA-RS1, RSK2
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: S6K-ALPHA-3, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 3, P90-RSK 3, P90RSK3, MAP KINASE-ACTIVATED PROTEIN KINASE 1B, MAPK-ACTIVATED PROTEIN KINASE 1B, MAPKAP KINASE 1B, MAPKAPK-1B, RIBOSOMAL S6 KINASE 2, RSK-2, PP90RSK2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2RMM1Ligand/Ion(2E)-2-CYANO-3-[3-(1H-PYRAZOL-4-YL)PHENYL]PROP-2-ENAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:428 , VAL A:430 , SER A:434 , CYS A:436 , ALA A:449 , LYS A:451 , ILE A:477 , GLU A:494 , LEU A:495 , MET A:496 , ASP A:561BINDING SITE FOR RESIDUE RMM A 801
2AC2SOFTWAREGLY A:471 , HIS A:473 , PRO A:474 , ILE A:476 , THR A:478BINDING SITE FOR RESIDUE NA A 802

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:579 -A:579

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:411 -His A:412
2Val A:430 -Gly A:431

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M8T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M8T)

(-) Exons   (0, 0)

(no "Exon" information available for 4M8T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhheeeeeeeee...eeeeeeee....eeeeeeeee.....hhhhhhhhhhhh.......eeeeee...eeeeeee....eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....hhh.eee.hhhhhee..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.....hhhhh..hhhhhhhhhhhh........hhhhhh.hhhhhhhhhh.........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m8t A 410 QLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVMELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQYQLNRQDAPHLVKGAMAATYSALNR 712
                                   419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M8T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M8T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M8T)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:411 - His A:412   [ RasMol ]  
    Val A:430 - Gly A:431   [ RasMol ]  
 

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  4m8t
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  KS6A3_MOUSE | P18654
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KS6A3_MOUSE | P18654: 2qr7 2qr8 3g51 3ubd 4el9 4gue 4mao

(-) Related Entries Specified in the PDB File

4mao