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(-) Description

Title :  FUNGAL PROTEIN
 
Authors :  O. S. Rosenberg, M. L. Lohse, R. M. Stroud, A. D. Johnson
Date :  13 Aug 13  (Deposition) - 25 Jun 14  (Release) - 20 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym./Biol. Unit :  A,B,R
Keywords :  Wopr Fungal-Pathogenesis Transcription, Wopr Domain, Transcription Factor, Transcription, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. B. Lohse, O. S. Rosenberg, J. S. Cox, R. M. Stroud, J. S. Finer-Moore, A. D. Johnson
Structure Of A New Dna-Binding Domain Which Regulates Pathogenesis In A Wide Variety Of Fungi.
Proc. Natl. Acad. Sci. Usa V. 111 10404 2014
PubMed-ID: 24994900  |  Reference-DOI: 10.1073/PNAS.1410110111

(-) Compounds

Molecule 1 - CHAIN A OF DSDNA CONTAINING THE CIS-REGULATORY ELEMENT
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 6-201
    Other Details: DNA SYNTHESIS THROUGH STANDARD METHODS AND ANNEALING OF DOUBLE STRANDED DNA.
    Synthetic: YES
 
Molecule 2 - CHAIN B OF DSDNA CONTAINING THE CIS-REGULATORY ELEMENT
    Chains: B
    Engineered: YES
    Other Details: DNA SYNTHESIS THROUGH STANDARD METHODS AND ANNEALING OF DOUBLE STRANDED DNA.
    Synthetic: YES
 
Molecule 3 - YHR177W
    Chains: R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: H3C
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET
    Gene: YHR177W, YHR177WP
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: S288C

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDT A:10 , DG A:11 , PHE R:121 , SER R:122 , HIS R:139BINDING SITE FOR RESIDUE EDO R 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M8B)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly R:88 -Ser R:89
2Ala R:107 -His R:108

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M8B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M8B)

(-) Exons   (0, 0)

(no "Exon" information available for 4M8B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:20
                                                    
                 4m8b A   1 GCGCGTTAGTGTTTACGCGG  20
                                    10        20


Chain B from PDB  Type:DNA  Length:20
                                                    
                 4m8b B   2 CGCGTAAACACTAACGCGCC  21
                                    11        21


Chain R from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....hhhhhhhhhhhhhh..........hhhhhhhhh...eeeeeehhhhh.............eee..eeeeeeeee..........ee......eeeeeeeeeeeeeeee......eeeeeeeeeeehhhhhhh...hhhhhhhhhhhh.hhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4m8b R   1 SSPGPTCYGYIDDEQDLALVFQGVFNGNLRCIERRPYDAEKVELVNPGNIFVFNEEKSGIKRWTDGFSWSPSRISGKFLVYREYNRLGSHNVPEYNIFERAHRKYFYTGLLKKTFSLKFNMTDSTKLETFHLIAYYTEKDIHQGSLRRPSENPFFHKFRPSQKLLDALQKVAVGNGRSNPS 189
                                    10        20        30        40        50        60        70        80        96       106       116       126||     138       148       158       168       178       188 
                                                                                                                   89|                            127|                                                           
                                                                                                                    96                             130
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4M8B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M8B)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M8B)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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