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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A POSSIBLE AN IRON-BINDING (PERIPLASMIC SOLUTE-BINDING) PROTEIN FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228.
 
Authors :  K. Tan, H. Li, S. Clancy, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  12 Aug 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Iron Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, H. Li, S. Clancy, A. Joachimiak
The Crystal Structure Of A Possible An Iron-Binding (Periplasmic Solute-Binding) Protein From Staphylococcus Epidermidis Atcc 12228.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - IRON-BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SE_0383
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 176280
    Strain: ATCC 12228
    Synonym: PERIPLASMIC SOLUTE-BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4M7O)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4M7O)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:71 -Pro A:72
2Lys A:187 -Pro A:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M7O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M7O)

(-) Exons   (0, 0)

(no "Exon" information available for 4M7O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4m7oa_ A: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee.hhhhhhhhhhh.hhh.eeeee.............eee.....hhhhhhhh...eeeee.hhh..hhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........eeeeeee.....eee...hhhhhhhhhh..ee.......eee.hhhhhhhhh..eeee....hhhhhhhhhhhh.hhhhhhhhhh..eee.hhhhhh....hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4m7o A  37 KKYHRIISLIPSNTEILYRLGIGEDIVGVSTVDDYPKDVKKGKKQFDAmNLNKEELIKAKPDLILAHESQKNSAGKVLKSLKDKGVKVVYVKDAQSIDETYDTFKSIGQLTDREKQAKELVDETKHNVDKIINSVPKHHKKQEVFmEVSSKPDIYTAGKDTFFNDmLEKLDAKNSFDDVKGWKSVSKESIIKRNPDILISTEGKSKSDYIEmIKKRGGFDKINAVKNTRIETVDGDEVSRPGPRIDEGLKDLRDDIYK 294
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176     | 186       196     | 206       216       226       236       246 |     256       266       276       286        
                                                                           85-MSE                                                                                          182-MSE             202-MSE                                       248-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M7O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M7O)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Lys A:187 - Pro A:188   [ RasMol ]  
    Tyr A:71 - Pro A:72   [ RasMol ]  
 

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 Related Entries

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