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(-) Description

Title :  INFLUENZA NEURAMINIDASE IN COMPLEX WITH A STEREOMUTATED ANALOGUE OF OSELTAMIVIR CARBOXYLATE
 
Authors :  P. S. Kerry
Date :  06 Aug 13  (Deposition) - 12 Feb 14  (Release) - 26 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Sialidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Sartori, L. Dell'Amico, L. Battistini, C. Curti, S. Rivara, D. Pala P. S. Kerry, G. Pelosi, G. Casiraghi, G. Rassu, F. Zanardi
Synthesis, Structure And Inhibitory Activity Of A Stereoisomer Of Oseltamivir Carboxylate.
Org. Biomol. Chem. V. 12 1561 2014
PubMed-ID: 24425043  |  Reference-DOI: 10.1039/C3OB42069H

(-) Compounds

Molecule 1 - NEURAMINIDASE
    Chains: A
    Fragment: UNP RESIDUES 80-469
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 385580
    Strain: A/DUCK/UKRAINE/1/1963 (H3N8)

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
122N1Ligand/Ion(3R,4S,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
2CA1Ligand/IonCALCIUM ION
3NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
122N4Ligand/Ion(3R,4S,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
2CA-1Ligand/IonCALCIUM ION
3NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:151 , ARG A:224 , ALA A:246 , GLU A:276 , GLU A:277 , ARG A:292 , TYR A:347 , ARG A:371 , TYR A:406 , HOH A:889 , HOH A:925BINDING SITE FOR RESIDUE 22N A 501
2AC2SOFTWAREASP A:293 , GLY A:297 , ASP A:324 , TYR A:347 , HOH A:604 , HOH A:1007BINDING SITE FOR RESIDUE CA A 502
3AC3SOFTWAREASN A:146 , HOH A:882BINDING SITE FOR RESIDUE NAG A 503

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:92 -A:417
2A:124 -A:129
3A:183 -A:230
4A:232 -A:237
5A:278 -A:291
6A:280 -A:289
7A:318 -A:337
8A:421 -A:447

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Thr A:325 -Pro A:326
2Lys A:430 -Pro A:431
3Leu A:464 -Pro A:465

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4M3M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4M3M)

(-) Exons   (0, 0)

(no "Exon" information available for 4M3M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:390
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4m3ma_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhh.....eeee...eee....eeeeeeeeeee..hhhhh..........eeeeee.....hhhhheeeee..eeeeee....eeeeeee......eeeeee..eeeeeee..............eee..eeeeeeee.......eeeeeeee..eeeeeeee.......eeeeeeee..eeeeeee........eeeee.....eeeee............hhhhh..................eeee..eeeeee.......eeeeeeee..........eeeeeeeeeeeee...eeeee.hhhhhh.....eeeeeeeeee........eeeeeeeeeee................hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4m3m A   82 GTYMNNTEAICDVKGFAPFSKDNGIRIGSRGHIFVIREPFVSCSPIECRTFFLTQGSLLNDKHSNGTVKDRSPFRTLMSVKVGQSPNVYQARFEAVAWSATACHDGKKWMTVGVTGPDSKAVAVIHYGGVPTDVINSWAGDILRTQESSCTCIQGDCYWVMTDGPANRQAQYRIYKANQGRIIGQADISFNGGHIEECSCYPNDGKVECVCRDNWTGTNRPVLVISPDLSYRVGYLCAGIPSDTPRGEDAQFTGSCTSPMGNQGYGVKGFGFRQGTDVWMGRTISRTSRSGFEILRIKNGWTQTSKEQVRKQVVVDNLNWSGYSGSFTLPVELSGKDCLVPCFWVEMIRGKPEEKTIWTSSSSIVMCGVDYEIADWSWHDGAILPFDIDK  470
                                    91       101       111       121       131       141       151       161       170       180       190       200       210       220       230       240       250       260       270       280       290       300     ||311       321      330A||||   341||     352       362       372       382       392|      403      412A|||    419       429   ||  440       450       460       470
                                                                                                                 169A                                                                                                                                      306|                   330A||||    342|                                             392|               412A|||                  433|                                   
                                                                                                                                                                                                                                                            308                    330B|||     344                                              394                412B||                   435                                   
                                                                                                                                                                                                                                                                                     332||                                                                          412C|                                                         
                                                                                                                                                                                                                                                                                      333|                                                                           412D                                                         
                                                                                                                                                                                                                                                                                       335
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4M3M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4M3M)

(-) Gene Ontology  (15, 30)

Asymmetric Unit(hide GO term definitions)

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  Q0A480_I63A3 | Q0A480
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NRAM_I63A3 | Q07599: 2ht5 2ht7 2ht8 2htq 2htr 2htu 3o9j 3o9k 4d8s 4gb1 4ks1 4mju 4mjv
        Q0A480_I63A3 | Q0A480: 4ks1
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        Q0A480_I63A3 | Q0A480: 4ks2 4ks3 4ks4 4ks5

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4M3M)