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(-) Description

Title :  CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM THERMOANAEROBACTER PSEUDETHANOLICUS ATCC 33223, NYSGRC TARGET 029700.
 
Authors :  V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. S J. B. Bonanno, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Date :  31 Jul 13  (Deposition) - 14 Aug 13  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Protein Structure Initiative, Nysgrc, Phosphoribosyltransferase, Psi-Biology, New York Structural Genomics Research Consortium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Adenine Phosphoribosyltransferase From Thermoanaerobacter Pseudethanolicus Atcc 33223, Nysgrc Target 029700.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ADENINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B
    EC Number: 2.4.2.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON+RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: 166856274, APT, TETH39_1027
    Organism Scientific: THERMOANAEROBACTER PSEUDETHANOLICUS
    Organism Taxid: 340099
    Strain: ATCC 33223
    Synonym: APRT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:167 , LYS A:170 , ILE B:166 , SER B:167 , LYS B:170BINDING SITE FOR RESIDUE CL A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LZA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe A:14 -Pro A:15
2Glu A:57 -Ala A:58
3Phe B:14 -Pro B:15
4Glu B:57 -Ala B:58

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LZA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LZA)

(-) Exons   (0, 0)

(no "Exon" information available for 4LZA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains d4lzaa_ A: automated matches                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhh.eeee.......eeeehhhhhhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhh.eeeee.........eeeeee..eeeeee........eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee.hhhhhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lza A   0 TLEEIKmmIREIPDFPKKGIKFKDITPVLKDAKAFNYSIEmLAKALEGRKFDLIAAPEARGFLFGAPLAYRLGVGFVPVRKPGKLPAETLSYEYETDSLEIHKDAVLEGQRVVIVDDLLATGGTIYASAKLVESLGGIVDSIIFLTELTFLDGRKKLDGYDIISLIKF 171
                                  || 9        19        29        39|       49        59        69        79        89    || 103       113       123       133       143       153       163        
                                  6-MSE                            40-MSE                                                94|                                                                        
                                   7-MSE                                                                                  99                                                                        


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains d4lzab_ B: automated matches                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhheeee.......eeeehhhhhhhhhhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhh.eeeee.........eeeeeeee..eeeeeeee........eeeeeeeee..hhhhhhhhhhhhhh..eeeeeeeeee....hhhhhh....eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lza B   0 TLEEIKmmIREIPDFPKKGIKFKDITPVLKDAKAFNYSIEmLAKALEGRKFDLIAAPEARGFLFGAPLAYRLGVGFVPVRKPGKLPAETLSYEYELEYGTDSLEIHKDAVLEGQRVVIVDDLLATGGTIYASAKLVESLGGIVDSIIFLTELTFLDGRKKLDGYDIISLIKF 171
                                  || 9        19        29        39|       49        59        69        79        89        99       109       119       129       139       149       159       169  
                                  6-MSE                            40-MSE                                                                                                                               
                                   7-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LZA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LZA)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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