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Title :   CRYSTAL STRUCTURE OF HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE FROM SHEWANELLA PEALEANA ATCC 700345, NYSGRC TARGET 029677.

Authors :   V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. S J. B. Bonanno, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)

Date :   31 Jul 13 (Deposition) - 14 Aug 13 (Release) - 14 Aug 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Structural Genomics, Protein Structure Initiative, Nysgrc, Hypoxanthine Phosphoribosyltransferase, Psi-Biology, New York Structural Genomics Research Consortium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Hypoxanthine Phosphoribosyltransferase From Shewanella Pealeana Atcc 700345, Nysgrc Target 029677.
To Be Published
PubMed: search

Molecule 1 - HYPOXANTHINE PHOSPHORIBOSYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.4.2.8
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BC-PSGX3(BC)
	Expression System Strain	:	BL21(DE3)CODON+RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	5661087, SPEA_0688
	Organism Scientific	:	SHEWANELLA PEALEANA
	Organism Taxid	:	398579
	Strain	:	ATCC 700345

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 23)

No.	Name	Count	Type	Full Name
1	MSE	21	Mod. Amino Acid	SELENOMETHIONINE
2	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:98 , ILE A:101 , ASP A:102 , SER A:103 , GLY A:104 , ASN A:105 , THR A:106 , LEU A:107	BINDING SITE FOR RESIDUE PO4 A 201
2	AC2	SOFTWARE	GLU D:98 , ILE D:101 , ASP D:102 , SER D:103 , GLY D:104 , ASN D:105 , THR D:106 , LEU D:107	BINDING SITE FOR RESIDUE PO4 D 201

(no "SS Bond" information available for 4LYY)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:41	-	Lys A:42
2	Leu B:41	-	Lys B:42
3	Leu C:41	-	Lys C:42
4	Leu D:41	-	Lys D:42

(no "SAP(SNP)/Variant" information available for 4LYY)

(no "PROSITE Motif" information available for 4LYY)

(no "Exon" information available for 4LYY)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains d4lyya_ A: automated matches                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhh....eeeeeeeee......eee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhh.......eeeee.....ee...............eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lyy A  -3 YFQSmKHTTEVmITAEEIDQKLDILAEQINAHYADSDRLLmVGLLKGSVVFmADLCRRIKGHVEIDFmSVSSRDVKILKDVQSEIQGRDVLIVEDLIDSGNTLNKVRDmLLLREPKSLALCTLLDKPERREVDVPVDFIGFTIPDEFIVGYGIDYAEQYRNLPYIAKVVPL 175
                                |    6 |      16        26        36|       46 |      56       |66 ||     84        94       104       114       124       134       144       154       164       174 
                                |      8-MSE                       37-MSE     48-MSE          64-MSE|                                 113-MSE                                                          
                                1-MSE                                                              77

Chain B from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d4lyyb_ B: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhh.....eeeeeeeee....eeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhh.......eeeee.....ee...............eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lyy B   3 HTTEVmITAEEIDQKLDILAEQINAHYADSDRLLmVGLLKGSVVFmADLCRRIKGHVEIDFmSVSSRDVKILKDVQSEIQGRDVLIVEDLIDSGNTLNKVRDmLLLREPKSLALCTLLDKPERREVDVPVDFIGFTIPDEFIVGYGIDYAEQYRNLPYIAKVVP 174
                                 |  12        22        32    |   42     |  52        62 |   || 80        90       100       110  |    120       130       140       150       160       170    
                                 8-MSE                       37-MSE     48-MSE          64-MSE|                                 113-MSE                                                         
                                                                                             77

Chain C from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains d4lyyc_ C: automated matches                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhh....eeeeeeeeee....eeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhh.......eeeee.....ee...............eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lyy C   2 KHTTEVmITAEEIDQKLDILAEQINAHYADSDRLLmVGLLKGSVVFmADLCRRIKGHVEIDFmSVSSRDVKILKDVQSEIQGRDVLIVEDLIDSGNTLNKVRDmLLLREPKSLALCTLLDKPERREVDVPVDFIGFTIPDEFIVGYGIDYAEQYRNLPYIAKVV 173
                                  | 11        21        31     |  41      | 51        61  |  || 79        89        99       109   |   119       129       139       149       159       169    
                                  8-MSE                       37-MSE     48-MSE          64-MSE                                  113-MSE                                                        
                                                                                             76

Chain D from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d4lyyd_ D: automated matches                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhh....eeeeeeeee.......eee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.hhhh.......eeeee.....ee...............eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lyy D   2 KHTTEVmITAEEIDQKLDILAEQINAHYADSDRLLmVGLLKGSVVFmADLCRRIKGHVEIDFmSVSSYRDVKILKDVQSEIQGRDVLIVEDLIDSGNTLNKVRDmLLLREPKSLALCTLLDKPERREVDVPVDFIGFTIPDEFIVGYGIDYAEQYRNLPYIAKVVP 174
                                  | 11        21        31     |  41      | 51        61  |    |78        88        98       108    |  118       128       138       148       158       168      
                                  8-MSE                       37-MSE     48-MSE          64-MSE9|                                 113-MSE                                                         
                                                                                               77

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: PRTase-like (145)

Superfamily: PRTase-like (145)

Family: automated matches (39)

Protein domain: automated matches (39)

Shewanella pealeana [TaxId: 398579] (1)

1a	d4lyya_	A:
1b	d4lyyb_	B:
1c	d4lyyc_	C:
1d	d4lyyd_	D:

(no "CATH Domain" information available for 4LYY)

(no "Pfam Domain" information available for 4LYY)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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		Leu C:41 - Lys C:42	[ RasMol ]
		Leu D:41 - Lys D:42	[ RasMol ]

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