4LXR - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF THE TOLL - SPATZLE COMPLEX, A MOLECULAR HUB IN DROSOPHILA DEVELOPMENT AND INNATE IMMUNITY

Authors :   M. Stelter, C. Parthier, C. Breithaupt, M. T. Stubbs

Date :   30 Jul 13 (Deposition) - 09 Apr 14 (Release) - 21 May 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A,J,K

Keywords :   Tlr, Leucine-Rich Repeat, Immune System, Cytokine Receptor, Embryonic Development, Innate Immunity, Receptor-Ligand Complex', Immune System-Cytokine Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Parthier, M. Stelter, C. Ursel, U. Fandrich, H. Lilie, C. Breithaupt, M. T. Stubbs
Structure Of The Toll-Spatzle Complex, A Molecular Hub In Drosophila Development And Innate Immunity.
Proc. Natl. Acad. Sci. Usa V. 111 6281 2014
PubMed-ID: 24733933 | Reference-DOI: 10.1073/PNAS.1320678111

Molecule 1 - PROTEIN TOLL
	Chains	:	A
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Strain	:	SCHNEIDER 2
	Expression System Taxid	:	7227
	Fragment	:	UNP RESIDUES 28-802
	Gene	:	TL, CG5490
	Organism Common	:	FRUIT FLY
	Organism Scientific	:	DROSOPHILA MELANOGASTER
	Organism Taxid	:	7227

Molecule 2 - PROTEIN SPAETZLE C-106
	Chains	:	J, K
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	ROSETTA (DE3)
	Expression System Taxid	:	562
	Gene	:	SPZ, CG6134
	Organism Common	:	FRUIT FLY
	Organism Scientific	:	DROSOPHILA MELANOGASTER
	Organism Taxid	:	7227

		1	2	3
Asymmetric/Biological Unit	:	A	J	K

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 19)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:184 , SER A:206 , ASN A:207 , LYS A:208 , SER A:230 , GLN A:232 , ARG A:776 , HOH A:2131 , HOH A:2137 , HOH A:2520	BINDING SITE FOR RESIDUE EPE A 2019
02	AC2	SOFTWARE	ASN A:62 , ASN A:80	BINDING SITE FOR MONO-SACCHARIDE NAG A2006 BOUND TO ASN A 80
03	AC3	SOFTWARE	ASN A:140 , HIS A:164 , HOH A:2241 , HOH A:2391	BINDING SITE FOR MONO-SACCHARIDE NAG A2012 BOUND TO ASN A 140
04	AC4	SOFTWARE	THR A:269 , ASN A:270 , THR A:403 , ARG A:425	BINDING SITE FOR MONO-SACCHARIDE NAG A2013 BOUND TO ASN A 270
05	AC5	SOFTWARE	ILE A:323 , ARG A:325 , ASN A:346 , SER A:370 , THR A:393 , ASP A:394 , HOH A:2178 , HOH A:2255 , HOH A:2382 , HOH A:2393 , GLU J:48 , ALA J:50 , GLN J:52	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 346 RESIDUES 2001 TO 2005
06	AC6	SOFTWARE	ASN A:367 , THR A:390 , ASN A:391 , HOH A:2290	BINDING SITE FOR MONO-SACCHARIDE NAG A2017 BOUND TO ASN A 391
07	AC7	SOFTWARE	HIS A:447 , ASN A:482 , TYR A:506 , HOH A:2192 , HOH A:2320 , HOH A:2536	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 482 RESIDUES 2007 TO 2008
08	AC8	SOFTWARE	SER A:484 , ASN A:508	BINDING SITE FOR MONO-SACCHARIDE NAG A2018 BOUND TO ASN A 508
09	AC9	SOFTWARE	ARG A:481 , TYR A:506 , ASN A:528 , THR A:530 , HIS A:531 , ASP A:557 , ASP A:560 , ARG A:591 , ARG A:594 , HOH A:2466	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 528 RESIDUES 2009 TO 2011
10	BC1	SOFTWARE	LEU A:681 , ASN A:703 , HIS A:725	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 703 RESIDUES 2015 TO 2016
11	BC2	SOFTWARE	GLU A:692 , SER A:693 , ASN A:715	BINDING SITE FOR MONO-SACCHARIDE NAG A2014 BOUND TO ASN A 715

Asymmetric/Biological Unit

No.	Residues
1	A:34	-	A:45
2	A:43	-	A:56
3	A:79	-	A:107
4	A:565	-	A:597
5	A:567	-	A:618
6	A:631	-	A:637
7	A:635	-	A:650
8	A:755	-	A:781
9	A:757	-	A:799
10	J:10	-	J:68
11	J:47	-	J:99
12	J:54	-	J:101
13	J:98	-	K:98
14	K:10	-	K:68
15	K:47	-	K:99
16	K:54	-	K:101

Asymmetric/Biological Unit

No.	Residues
1	Cys A:56	-	Pro A:57
2	Gln A:599	-	Pro A:600

(no "SAP(SNP)/Variant" information available for 4LXR)

(no "PROSITE Motif" information available for 4LXR)

(no "Exon" information available for 4LXR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:755
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh......eeeee..eeeeee........eeeeee.eeeeeeee...hhhhhhhh......eeeeeeeee........hhhhhhhhh.ee...eeeee........hhhhhh......eeeee...................eeeee......hhhhhh......eee............hhhhh....eee.........hhhhhh......eee.....................eee.....................eeee......................eeee...................eee.....................eee.....................eee.......ee............eee.......ee............eee..........hhhhhhh.....hhhhhh....eee.........hhhhhhh.....eee.......eehhhhhh.......eee.......ee..........eeee.....ee.hhhhhhhhhhhh.....hhhh.eeee.....eee.......hhhhhhhhh.eee..........eeeee....eeeee....................eeeee...............hhhhh.eee.........hhhhh.....eee.........hhhhhhhhh..eee........hhhhhhhhhhhhh......hhhh.ee....ee.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lxr A  28 SFGRDACSEMSIDGLCQCAPIMSEYEIICPANAENPTFRLTIQPKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDNGIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLFANQPELQILRLRAELQSLPGDLFEHSTQITNISLGDNLLKTLPATLLEHQVNLLSLDLSNNRLTHLPDSLFAHTTNLTDLRLEDNLLTGISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHNDIDLQQPLLDIMLQTQINSPFGYMHGLLTLNLRNNSIIFVYNDWKNTMLQLRELDLSYNNISSLGYEDLAFLSQNRLHVNMTHNKIRRIALPEDVNNNLVHVDLNDNPLVCDCTILWFIQLVRGVHKPQYSRQFKLRTDRLVCSQPNVLEGTPVRQIEPQTLICPLDFSKCPRGCNCHVRTYDKALVINCHSGNLTHVPRLPNLHKNMQLMELHLENNTLLRLPSANTPGYESVTSLHLAGNNLTSIDVDQLPTNLTHLDISWNHLQMLNATVLGFLNWRSVKLSGNPWMCDCTAKPLLLFTQDNFERIGDRNEMMCVNAPTRMVELSTNDICP 800
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537     ||553       563       573       583       593       603       613       623|      639       649       659       669       679       689       699       709       719       729       743       753       763       773       783||     795     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             543|                                                                      623|                                                                                                         738|                                      784|             
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              550                                                                       630                                                                                                          743                                       787

Chain J from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee...eeeee........hhhhh....eeeeeeeee..eeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 4lxr J   5 DERFLCRSIRKLVAIQIEECEGADQPCDFAANFPQSYNPICKQHYTQKIPSCCKCALKTGLEHH 110
                                    14  ||    47        57        67      ||96       106    
                                       17|                               74|                
                                        41                                94

Chain K from PDB  Type:PROTEIN  Length:66
                                                                                                  
               SCOP domains ------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee....eeeee....eeeee.............hhhhh.eeeeeee..eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------ Transcript
                 4lxr K   1 VGGSDERFLCRSIRKLVQAIQIEECEGADQPCDFAANFPQSYNPICKQHYTQKIPSCCKCALKTGL 107
                                    10      ||42        52        62        72 ||    101      
                                           17|                                74|             
                                            40                                 94

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4LXR)

(no "CATH Domain" information available for 4LXR)

(no "Pfam Domain" information available for 4LXR)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Cys A:56 - Pro A:57	[ RasMol ]
		Gln A:599 - Pro A:600	[ RasMol ]

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	4lxr
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	TOLL_DROME \| P08953
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	SPZ_DROME \| P48607	:	3e07 4bv4 4lxs
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3e07	SPAETZLE LIGAND
4lxs

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (11, 11)

SS Bonds (16, 16)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (61, 73)

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