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(-) Description

Title :  A NONCOMPETITIVE INHIBITOR FOR M. TUBERCULOSIS'S CLASS IIA FRUCTOSE 1, 6-BISPHOSPHATE ALDOLASE
 
Authors :  G. C. Capodagli, S. D. Pegan
Date :  25 Jul 13  (Deposition) - 08 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.08
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Class Ii Fructose-1, 6-Bisphosphate Aldolase, Zinc Enzyme, Mycobacterium Tuberculosis, Dihydroxyacetone, Glyceraldehyde-3- Phosphate, Aldol Condensation, Glycolysis, Lyase, Metal-Binding, 8- Hydroxyquinoline-2-Carboxylic Acid, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. C. Capodagli, W. G. Sedhom, M. Jackson, K. A. Ahrendt, S. D. Pegan
A Noncompetitive Inhibitor For Mycobacterium Tuberculosis'S Class Iia Fructose 1, 6-Bisphosphate Aldolase.
Biochemistry V. 53 202 2014
PubMed-ID: 24325645  |  Reference-DOI: 10.1021/BI401022B

(-) Compounds

Molecule 1 - FRUCTOSE-BISPHOSPHATE ALDOLASE
    Chains: A
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET17B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FBA, MT0379, MTCY13E10.25C, RV0363C
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV
    Synonym: FBP ALDOLASE, FBPA, FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric Unit (4, 6)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
28HC1Ligand/Ion8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID
3ACT2Ligand/IonACETATE ION
4ZN2Ligand/IonZINC ION
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
28HC4Ligand/Ion8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID
3ACT8Ligand/IonACETATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:96 , HIS A:252 , 8HC A:403BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREGLU A:198 , HIS A:199 , HIS A:344 , HIS A:346 , HOH A:538BINDING SITE FOR RESIDUE ZN A 402
3AC3SOFTWAREHIS A:96 , GLU A:161 , GLU A:178 , HIS A:252 , ZN A:401 , HOH A:533 , HOH A:652BINDING SITE FOR RESIDUE 8HC A 403
4AC4SOFTWAREGLY A:197 , LYS A:201 , TYR A:202 , ASP A:248 , HOH A:568BINDING SITE FOR RESIDUE ACT A 404
5AC5SOFTWAREVAL A:65 , HOH A:787BINDING SITE FOR RESIDUE ACT A 405
6AC6SOFTWARELYS A:300 , ASP A:302 , VAL A:305 , TYR A:311BINDING SITE FOR RESIDUE 1PE A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LV4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LV4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LV4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LV4)

(-) Exons   (0, 0)

(no "Exon" information available for 4LV4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhh...eeeeehhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhhhhhhhhhh.......eeeee....hhhhhhhhhhhhhhhhhhh..eeeee..ee...ee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhh..........eee........hhhhhhhhh.eeeeeehhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lv4 A   2 PIATPEVYAEMLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHTDHCPKDKLDSYVRPLLAISAQRVSKGGNPLFQSHMWDGSAVPIDENLAIAQELLKAAAAAKIILEIEIGVVGEKLYTSPEDFEKTIEALGAGEHGKYLLAATFGPDILAQGQQVAAAKLGLPADAKPFDFVFHGGSGSLKSEIEEALRYGVVKMNVDTDTQYAFTRPIAGHMFTNYDGVLKVDGEVGVKKVYDPRSYLKKAEASMSQRVVQACNDLHCAGKSLTHHH 346
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161    || 182       192       202      |226       236       246       256       266       276       286       296       306       316       326       336       346
                                                                                                                                                                                              166|                            209|                                                                                                                          
                                                                                                                                                                                               178                             224
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LV4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LV4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LV4)

(-) Gene Ontology  (13, 21)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALF_MYCTO | P9WQA2: 3ekl 3ekz 3elf 4a21 4a22 4def 4del
        ALF_MYCTU | P9WQA3: 3ekl 3ekz 3elf 4a21 4a22 4def 4del

(-) Related Entries Specified in the PDB File

3ekl 3ekz 3elf 4a21 4a22 4def 4del