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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-KETO-3-DEOXY-D-MANNO-OCTULOSONATE-8-PHOSPHATE SYNTHASE FROM PSEUDOMONAS AERUGINOSA.
 
Authors :  O. A. Asojo
Date :  24 Jul 13  (Deposition) - 09 Oct 13  (Release) - 01 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Tim Alpha-Beta Barrel, Aldolase, Phophoenol Pyruvate, Arabinose 5 Phosphate, Kdo8P, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Nelson, A. Kelleher, G. Robinson, S. Reiling, O. A. Asojo
Structure Of 2-Keto-3-Deoxy-D-Manno-Octulosonate-8-Phosphat Synthase From Pseudomonas Aeruginosa.
Acta Crystallogr. , Sect. F V. 69 1084 2013
PubMed-ID: 24100553  |  Reference-DOI: 10.1107/S1744309113023993

(-) Compounds

Molecule 1 - 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE
    Chains: A, B, C, D
    EC Number: 2.5.1.55
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228
    Synonym: 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHASE, KDO- 8-PHOSPHATE SYNTHASE, KDO 8-P SYNTHASE, KDOPS, PHOSPHO-2-DEHYDRO-3- DEOXYOCTONATE ALDOLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LU0)

(-) Sites  (0, 0)

(no "Site" information available for 4LU0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LU0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LU0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LU0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LU0)

(-) Exons   (0, 0)

(no "Exon" information available for 4LU0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4lu0a_ A: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee..............hhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeee......hhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee..ee.....ee..hhhhhhhhh....eeee......hhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lu0 A  10 KIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALRRAQVTDLAKAGLSQKLAGLFLEAHPLNKLEAFLSQLKQLDELIKSFP 282
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       221       231       241    || 265       275       
                                                                                                                                                                                                                                208|                      246|                     
                                                                                                                                                                                                                                 221                       261                     


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains d4lu0b_ B: automated matches                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhh.....eeee..............hhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeee..hhhhhhhhhhhhhhh..eeeeee.......hhhhhhhhhhhh....eeeee..ee.....ee.hhhhhhhhhh....eeee.......hhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lu0 B   8 AQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALQRAQVTDLAKAGLSQKLAGLFLEAKLEAFLSQLKQLDELIKSFPAI 284
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207 ||    229       239    || 267       277       
                                                                                                                                                                                                                                   209|                   244|                     
                                                                                                                                                                                                                                    222                    263                     


Chain C from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains d4lu0c_ C: automated matches                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhh.eeeehhhhh.hhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh....eeeee..ee.....ee..hhhhhhhhh....eeee.hhhh.hhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lu0 C   8 AQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALRAQVTDLAKAGLSQKLAGLFLEAHPDRLNKLEAFLSQLKQLDELIKSFP 282
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207||     230       240      |262       272       282
                                                                                                                                                                                                                                  208|                      247|                      
                                                                                                                                                                                                                                   222                       260                      


Chain D from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains d4lu0d_ D: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eee......eeeeeeee..hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhh..eeee.....hhhhhhh...eeee......hhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh.....eeeee..ee.....ee..hhhhhhhhh....eee........hhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lu0 D   9 QKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALRAQVTDLAKAGLSQKLAGLFLEAHPDPELRLNKLEAFLSQLKQLDELIKSFP 282
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208|      231       241       260       270       280  
                                                                                                                                                                                                                                 208|                        249|                       
                                                                                                                                                                                                                                  222                         259
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LU0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LU0)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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