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(-) Description

Title :  MYOKINE STRUCTURE
 
Authors :  M. A. Schumacher, T. Ohashi, R. S. Shah, N. Chinnam, H. Erickson
Date :  22 Jul 13  (Deposition) - 16 Oct 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  G,H  (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Myokine, Metabolism, Hormone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Schumacher, N. Chinnam, T. Ohashi, R. S. Shah, H. P. Erickson
The Structure Of Irisin Reveals A Novel Intersubunit Beta-Sheet Fibronectin Type Iii (Fniii) Dimer: Implications For Receptor Activation.
J. Biol. Chem. V. 288 33738 2013
PubMed-ID: 24114836  |  Reference-DOI: 10.1074/JBC.M113.516641

(-) Compounds

Molecule 1 - FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 5
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 33-130
    Gene: FNDC5, FRCP2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FIBRONECTIN TYPE III REPEAT-CONTAINING PROTEIN 2, IRISIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):       GH
Biological Unit 4 (1x):     EF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4LSD)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LSD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LSD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LSD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LSD)

(-) Exons   (0, 0)

(no "Exon" information available for 4LSD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee......eeeeee......eeeeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..........eeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4lsd A  29 mSPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPREAE 126
                            |       38        48        58        68    |   78        88        98       108       118        
                            |                                          73-MSE                                                 
                           29-MSE                                                                                             


Chain B from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee..hhh.eeeeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..ee......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lsd B  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                                    39        49        59        69   |    79        89        99       109       119    
                                                                      73-MSE                                              


Chain C from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee......eeeeee......eeeeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..........eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4lsd C  29 mSPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                            |       38        48        58        68    |   78        88        98       108       118     
                           29-MSE                                      73-MSE                                              


Chain D from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee......eeeeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..ee......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lsd D  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                                    39        49        59        69   |    79        89        99       109       119    
                                                                      73-MSE                                              


Chain E from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.......eeeee......eeeeeeeeee.....eeeeeee.....eee........eeeeeeeeee..ee......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lsd E  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                                    39        49        59        69   |    79        89        99       109       119    
                                                                      73-MSE                                              


Chain F from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee........eeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..ee......eeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4lsd F  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPREAEK 127
                                    39        49        59        69   |    79        89        99       109       119        
                                                                      73-MSE                                                  


Chain G from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......eeeeee........eeeeeeee.....eeeeeee.....eeee.......eeeeeeeeee..ee......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lsd G  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                                    39        49        59        69   |    79        89        99       109       119    
                                                                      73-MSE                                              


Chain H from PDB  Type:PROTEIN  Length:94
                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee..eeeeeee......eeeeeeeeee.....eeeeeee.....eeeee......eeeeeeeeee..ee......eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 4lsd H  30 SPSAPVNVTVRHLKANSAVVSWDVLEDEVVIGFAISQQKKDVRmLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPR 123
                                    39        49        59        69   |    79        89        99       109       119    
                                                                      73-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LSD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LSD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LSD)

(-) Gene Ontology  (12, 12)

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