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(-) Description

Title :  PHOSPHOPENTOMUTASE 4H11 VARIANT
 
Authors :  W. A. Birmingham, C. A. Starbird, T. D. Panosian, D. P. Nannemann, T. M. I B. O. Bachmann
Date :  19 Jul 13  (Deposition) - 31 Jul 13  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A
Keywords :  Alkaline Phosphatase Family, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. R. Birmingham, C. A. Starbird, T. D. Panosian, D. P. Nannemann, T. M. Iverson, B. O. Bachmann
Bioretrosynthetic Construction Of A Didanosine Biosynthetic Pathway.
Nat. Chem. Biol. V. 10 392 2014
PubMed-ID: 24657930  |  Reference-DOI: 10.1038/NCHEMBIO.1494

(-) Compounds

Molecule 1 - PHOSPHOPENTOMUTASE 4H11 VARIANT
    Chains: A
    EC Number: 5.4.2.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BC_4087, DEOB
    Mutation: YES
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 1396
    Synonym: PHOSPHODEOXYRIBOMUTASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MN3Ligand/IonMANGANESE (II) ION
3TPO1Mod. Amino AcidPHOSPHOTHREONINE
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETPO A:85 , ASP A:286 , HIS A:291 , HIS A:339 , HOH A:502 , HOH A:503 , HOH A:519BINDING SITE FOR RESIDUE MN A 401
2AC2SOFTWAREASP A:13 , TPO A:85 , ASP A:327 , HIS A:328BINDING SITE FOR RESIDUE MN A 402
3AC3SOFTWAREGLY A:27 , ASP A:28 , HIS A:334 , HOH A:568 , HOH A:601 , HOH A:654BINDING SITE FOR RESIDUE MN A 403
4AC4SOFTWAREGLU A:300 , GLN A:303 , ASN A:390 , GLU A:391 , HOH A:647 , HOH A:751BINDING SITE FOR RESIDUE TRS A 404
5AC5SOFTWAREASP A:284 , LEU A:288 , GLU A:375 , ASN A:390 , HOH A:509 , HOH A:546 , HOH A:564 , HOH A:594 , HOH A:605BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWAREGLY A:30 , ASP A:32 , HIS A:36BINDING SITE FOR RESIDUE GOL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LRD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LRD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LRD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LRD)

(-) Exons   (0, 0)

(no "Exon" information available for 4LRD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..........hhhhh....hhhhhhhhhh....hhhhhhhhhhhhh.............eeeee.......hhhhhhhhhh...............hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh.eeeee....eeeeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee..eeee....eeee......hhhhhhhhh..eeeee.hhhhhh......eee...hhhhhhhhhhhhhh....eeeeeeehhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...eeeeee..................eeeeee................hhhhhhhhhhhhh.........hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lrd A   2 NKYKRIFLVVMDSVGIGEAPDAEQFGDLGSDTIGHIAEHMNGLQMPNMVKLGLGNIREMKGISKVEKPLGYYTKMQEKSIGKDtMTGHWEIMGLYIDTPFQVFPEGFPKELLDELEEKTGRKIIGNKPASGTEILDELGQEQMETGSLIVYTSADSLLQIAAHEEVVPLDELYKICKIARELTLDEKYKVGRVIARPFVGEPGNFTRTPNRHDYALKPFGRTVMNELKDSDYDVIAIGKISDIYDGEGVTESLRTKSNMDGMDKLVDTLNMDFTGLSFLNLVDFDALFGHRRDPQGYGEALQEYDARLPEVFAKLKEDDLLLITADHGNDPIHPGTDHTREYVPLLAYSPSMKEGGQELPLRQTFADIGATVAENFGVKMPEYGTSFLNEL 392
                                    11        21        31        41        51        61        71        81   |    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391 
                                                                                                              85-TPO
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LRD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LRD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LRD)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  4lrd
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  DEOB_BACCR | Q818Z9
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  5.4.2.7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DEOB_BACCR | Q818Z9: 3m8w 3m8y 3m8z 3ot9 3twz 3tx0 3un2 3un3 3un5 3uny 3uo0 4lr7 4lr8 4lr9 4lra 4lrb 4lrc 4lre 4lrf

(-) Related Entries Specified in the PDB File

3m8z 3twz 3tx0 3un3 4lr7 4lr8 4lr9 4lra 4lrb 4lrc 4lre 4lrf