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(-) Description

Title :  STRUCTURE OF CBM32-3 FROM A FAMILY 31 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS
 
Authors :  J. M. Grondin, H. S. Furness, D. Duan, C. A. Spencer, J. S. Allingham, S. P
Date :  19 Jul 13  (Deposition) - 23 Jul 14  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym./Biol. Unit :  A
Keywords :  B-Sandwich, Carbohydrate-Binding, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Grondin, D. Duan, A. C. Kirlin, K. T. Abe, S. Chitayat, H. L. Spencer, C. Spencer, A. Campigotto, S. Houliston, C. H. Arrowsmith, J. S. Allingham, A. B. Boraston, S. P. Smith
Diverse Modes Of Galacto-Specific Carbohydrate Recognition By A Family 31 Glycoside Hydrolase From Clostridium Perfringens.
Plos One V. 12 71606 2017
PubMed-ID: 28158290  |  Reference-DOI: 10.1371/JOURNAL.PONE.0171606

(-) Compounds

Molecule 1 - GLYCOSYL HYDROLASE, FAMILY 31/FIBRONECTIN TYPE III DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CBM32-3, UNP RESIDUES 1640-1785
    Gene: CPF_1301
    Organism Scientific: CLOSTRIDIUM PERFRINGENS
    Organism Taxid: 195103
    Strain: ATCC 13124

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:31 , ASP A:34 , ASP A:36 , THR A:39 , ALA A:149 , GLU A:150BINDING SITE FOR RESIDUE CA A 201
2AC2SOFTWARESER A:12 , LEU A:15 , VAL A:33 , HOH A:309 , HOH A:335 , HOH A:424BINDING SITE FOR RESIDUE CA A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LQR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:51 -Pro A:52

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LQR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LQR)

(-) Exons   (0, 0)

(no "Exon" information available for 4LQR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:156
                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhh.hhh.eeeeee.......hhhhhhh......ee..........eeeeeeeeeeeeeeeeeee.........eeeeeeeee......eeeeeee...............eeeeeeeeeeeeeeeeeeee.........ee.eeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4lqr A   1 YKKAGSEFALDSSKLEAIYATSEADRDYKENAVDGDENTIWHSAYQAADKLPVSITIKLDKAYDLNQIDYLPRQNSRNGHVTEYKIETSLDNENWTEVRTGNLEVNEAGNALANRGYNPIRFNTINAQYLRFTALKTLGDTNNKYASAAELVFYGK 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LQR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LQR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LQR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A0H2YST8_C | A0A0H2YST8: 4lks 4lpl 4p5y 4uap

(-) Related Entries Specified in the PDB File

4lks GALACTOSE-BOUND STRUCTURE OF CBM32-3
4lpl CBM32-1 FROM SAME ENZYME