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(-) Description

Title :  RICKETTSIA RICKETTSII CELL SURFACE ANTIGEN 4 (SCA4) HEAD DOMAIN (RESIDUES 21-360)
 
Authors :  J. H. Lee, C. Vonrhein, G. Bricogne, T. Izard
Date :  17 Jul 13  (Deposition) - 28 Aug 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Lee, C. Vonrhein, G. Bricogne, T. Izard
Crystal Structure Of The N-Terminal Domains Of The Surface Cell Antigen 4 Of Rickettsia.
Protein Sci. V. 22 1425 2013
PubMed-ID: 23904352  |  Reference-DOI: 10.1002/PRO.2322

(-) Compounds

Molecule 1 - SCA-FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21-DE3
    Expression System Taxid: 469008
    Expression System Vector: PET-28A
    Fragment: UNP RESIDUES 38-349
    Gene: SCA4
    Organism Scientific: RICKETTSIA RICKETTSII
    Organism Taxid: 783

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LQ8)

(-) Sites  (0, 0)

(no "Site" information available for 4LQ8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LQ8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:300 -Pro A:301
2Lys B:300 -Pro B:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LQ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LQ8)

(-) Exons   (0, 0)

(no "Exon" information available for 4LQ8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee...ee......eeeeeee.....eeeeeeeeee....eeee.....eeee..eeee...........eeeeeee.ee............eeeeeeee.....eeeeeee....eeee......eeeeee..eeeeeeeehhhhhhhhhhhhhh.......eeee..ee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lq8 A  49 EADDGFIVTSNISPDSQTSDPITKAVRETIIQPQKDNLIEQILKDLAALTDRDLAEQKRKEIEEEKEKDKTLSTFFGNPANREFIDKALEKPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVSASDLRATVVKNDAGDELCTLNETTVKTKPFTLAKQDGTQVQISSYREIDFPIKLDQADGSMHLSMVALKADGTKPSKDKAVYFTAHYEEGPNGKPQLKEISSPKPLKFAGTGDDAIAYIEHGGEIYTLAVTRGKYKEMMKEVELNQGQSVDLSQAEDIIIGQGQ 360
                                    58|       83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       
                                    58|                                                                                                                                                                                                                                                                                              
                                     74                                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........ee...ee.....eeeeeeee.....eeeeeeeeee....eeee.....eeee..eeee...........eeeeeee.ee............eeeeeeee.....eeeeeee....eeee......eeeeee..eeeeeeeehhhhhhhhhhhhhh.......eeee..ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lq8 B  49 EADDGFIVTSQSTPSMSALSSQTSDPITKAVRETIIQPQKDNLIEQILKDLAALTDRDLAEQKRKEIEEEKEKDKTLSTFFGNPANREFIDKALEKPELKKKLESIEIAGYKNVHNTFSAASGYPGGFKPVQWENHVSASDLRATVVKNDAGDELCTLNETTVKTKPFTLAKQDGTQVQISSYREIDFPIKLDQADGSMHLSMVALKADGTKPSKDKAVYFTAHYEEGPNGKPQLKEISSPKPLKFAGTGDDAIAYIEHGGEIYTLAVTRGKYKEMMKEVELNQGQSVDLSQAEDIIIGQG 359
                                    58|       72|       88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358 
                                    58|       72|                                                                                                                                                                                                                                                                                        
                                     63        79
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LQ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LQ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LQ8)

(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Lys A:300 - Pro A:301   [ RasMol ]  
    Lys B:300 - Pro B:301   [ RasMol ]  
 
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 Related Entries

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        B0BXR4_RICRO | B0BXR4: 3tj5 3tj6

(-) Related Entries Specified in the PDB File

3h2u 3h2v 3smx 3vf0 3zzy 3zzz