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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HUMAN METAPNEUMOVIRUS MATRIX PROTEIN
 
Authors :  C. Leyrat, K. Harlos, J. M. Grimes
Date :  15 Jul 13  (Deposition) - 18 Dec 13  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Twisted Beta Sandwich, Viral Matrix, Lipid Binding, Calcium Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Leyrat, M. Renner, K. Harlos, J. T. Huiskonen, J. M. Grimes
Structure And Self-Assembly Of The Calcium Binding Matrix Protein Of Human Metapneumovirus.
Structure V. 22 136 2014
PubMed-ID: 24316400  |  Reference-DOI: 10.1016/J.STR.2013.10.013

(-) Compounds

Molecule 1 - MATRIX PROTEIN M
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: POPINS3C
    Expression System Strain: BL21(DE3) ROSETTA2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: M
    Organism Scientific: HUMAN METAPNEUMOVIRUS
    Organism Taxid: 162145
    Strain: SEROTYPE A1 (NL/1/00)

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:24 , ASP A:26 , LEU A:28 , LYS A:101 , HOH A:426BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREGLU B:24 , ASP B:26 , LEU B:28 , LYS B:101 , HOH B:412 , HOH B:428BINDING SITE FOR RESIDUE CA B 301
3AC3SOFTWAREGLU C:24 , ASP C:26 , LEU C:28 , LYS C:101 , HOH C:418 , HOH C:423BINDING SITE FOR RESIDUE CA C 301
4AC4SOFTWAREVAL B:94 , LEU B:96 , LEU D:226 , GLY D:227BINDING SITE FOR RESIDUE CL D 301
5AC5SOFTWAREGLU D:24 , ASP D:26 , LEU D:28 , LYS D:101 , HOH D:419 , HOH D:437BINDING SITE FOR RESIDUE CA D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LP7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr B:123 -Gly B:124

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LP7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LP7)

(-) Exons   (0, 0)

(no "Exon" information available for 4LP7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeeee....eeeeeeee..hhhhhhh..eeeee...hhhhhh.......eeeeeeeeeeeee........eeeeeeeeee....eeeeeeeeeee.........eeeee.....eeeeee......eeeeee.....hhhhhhhhhhheeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lp7 A   1 MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYGKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKEQALTQAKIAPYAGLIMIMTMNNPGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR 254
                                    10        20        30        40        50        60        70        80        90       100       110       120   ||  143       153       163       188       198       208||     225       235       245         
                                                                                                                                                     124|                              171|                   209|                                     
                                                                                                                                                      138                               187                    217                                     


Chain B from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeee......eeeeeee..hhhhhhh..eeeee.....hhhhhh.....eeeeeeeeeeeee............eeeeeeeeeee.....eeeeeeeeeee........eeeee.....eeeeee.......eeeeee.....hhhhhhhhhhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lp7 B   1 MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYGMVSVGKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKEQALTQAKIAPYAGLIMIMTMNNPKGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR 254
                                    10        20        30        40        50        60        70        80        90       100       110       120      |138       148       158       168  ||   193       203      |219       229       239       249     
                                                                                                                                                        127|                                171|                    210|                                     
                                                                                                                                                         136                                 187                     217                                     


Chain C from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeee......eeeeeee..hhhhhhh..eeeee.....hhhhhh.....eeeeeeeeeeeee......eeeeeeeeeee....eeeeeeeeeeee.................eeeee.....eeeee..........eeeee.....hhhhhhhhhhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lp7 C   1 MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKESESATVEAAIALTQAKIAPYAGLIMIMTMNNPKGGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR 254
                                    10        20        30        40        50        60        70        80        90       100       110       120  ||   144       154       164       174      |190       200       210||     225       235       245         
                                                                                                                                                    123|                                        181|                    211|                                     
                                                                                                                                                     138                                         188                     217                                     


Chain D from PDB  Type:PROTEIN  Length:230
                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......eeeeeeeeeee......eeeee...eee..hhhhhhhhhh..eeeeeee......eeeeeee..hhhhhhh..eeeee.....hhhhhh.....eeeeeeeeeeeee.......eeeeeeeeeee....eeeeeeeeeeee.................eeeee.....eeeeee........eeeeee.....hhhhhhhhhhheeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lp7 D   1 MESYLVDTYQGIPYTAAVQVDLIEKDLLPASLTIWFPLFQANTPPAVLLDQLKTLTITTLYAASQNGPILKVNASAQGAAMSVLPKKFEVNATVALDEYSKLEFDKLTVCEVKTVYLTTMKPYGKKTHDLIALCDFMDLEKNTPVTIPAFIKSVSIKESESATVEAAIALTQAKIAPYAGLIMIMTMNNPKGGAGTQVIVELGAYVQAESISKICKTWSHQGTRYVLKSR 254
                                    10        20        30        40        50        60        70        80        90       100       110       120  ||   143       153       163       173       189       199       209 ||    224       234       244       254
                                                                                                                                                    123|                                         181|                    211|                                     
                                                                                                                                                     137                                          188                     217
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LP7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LP7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LP7)

(-) Gene Ontology  (3, 3)

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