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(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS L-ALANINE DEHYDROGENASE X-RAY STRUCTURE IN COMPLEX WITH N6-METHYL ADENOSINE
 
Authors :  H. -B. Kim, L. -W. Hung, C. W. Goulding, T. C. Terwilliger, C. -Y. Kim, Str Of Mtb Proteins Conferring Susceptibility To Known Mtb Inhi (Mtbi)
Date :  10 Jul 13  (Deposition) - 06 Nov 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (6x)
Keywords :  Structural Genomics, Psi-Biology, Susceptibility To Known Mtb Inhibitors, Mtbi, Rossmann Fold, Oxidoreductase, N6-Methyl Adenosine Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. -B. Kim, L. -W. Hung, C. W. Goulding, T. C. Terwilliger, C. -Y. Kim
Drug Target Analysis By Dye-Ligand Affinity Chromatography
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALANINE DEHYDROGENASE
    Chains: A
    EC Number: 1.4.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETM11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ALD, RVBD_2780
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: H37RV

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A
Biological Unit 3 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
16MD1Ligand/IonN-METHYLADENOSINE
2GOL4Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (3, 8)
No.NameCountTypeFull Name
16MD1Ligand/IonN-METHYLADENOSINE
2GOL4Ligand/IonGLYCEROL
3SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 16)
No.NameCountTypeFull Name
16MD2Ligand/IonN-METHYLADENOSINE
2GOL8Ligand/IonGLYCEROL
3SO46Ligand/IonSULFATE ION
Biological Unit 3 (3, 48)
No.NameCountTypeFull Name
16MD6Ligand/IonN-METHYLADENOSINE
2GOL24Ligand/IonGLYCEROL
3SO418Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:197 , ASP A:198 , LYS A:203 , SER A:220 , VAL A:239 , LEU A:240 , LEU A:249 , HOH A:665BINDING SITE FOR RESIDUE 6MD A 401
2AC2SOFTWAREGLY A:177 , THR A:178 , ALA A:179 , GOL A:405BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWARELEU A:130 , SER A:134 , LEU A:240 , ILE A:267 , PRO A:302 , SO4 A:408BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREALA A:116 , THR A:119 , LYS A:341 , GLY A:342 , LEU A:343 , SER A:344 , SER A:352 , ARG A:354 , VAL A:355 , HOH A:532BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREALA A:126 , LEU A:127 , ALA A:131 , SER A:134 , THR A:178 , GOL A:402BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWAREARG A:156 , LYS A:259 , LYS A:307 , HOH A:538BINDING SITE FOR RESIDUE SO4 A 406
7AC7SOFTWAREGLY A:59 , THR A:60 , ALA A:61 , ASP A:62 , GLN A:63 , ARG A:84 , HOH A:583BINDING SITE FOR RESIDUE SO4 A 407
8AC8SOFTWAREARG A:15 , LYS A:75 , MET A:133 , ASN A:300 , PRO A:302 , GOL A:403BINDING SITE FOR RESIDUE SO4 A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LMP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LMP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LMP)

(-) Exons   (0, 0)

(no "Exon" information available for 4LMP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.............hhhhhhhhhhh..eeeee...hhhhh.hhhhhhhh..eee.hhhhhhhhh.eee.....hhhhhhhh....eeee..hhhhhhhhhhhhhhhh.eeee.hhh.........hhhhhhhhhhhhhhhhhhhhhhhhh...............eeeee..hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh....eeee.hhhhhhhhhhhh.eeee.............hhhhhhh.....eeee.hhhhh..............eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..ee.hhhhhhhhh.....hhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4lmp A   1 MRVGIPTETKNNEFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDLGVPFTEPASVLA 371
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4LMP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LMP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LMP)

(-) Gene Ontology  (4, 4)

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