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(-) Description

Title :  CRYSTAL STRUCTURE OF A NUCLEOPORIN 35KDA (NUP35) FROM HOMO SAPIENS AT 2.46 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
Date :  03 Jul 13  (Deposition) - 11 Sep 13  (Release) - 11 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Pf05172 Family, Nup53/35/40-Type Rna Recognition Motif, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Transport Protein, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of A Nucleoporin 35Kda (Nup35) From Homo Sapiens At 2. 46 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NUCLEOPORIN NUP53
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 151-266
    Gene: BC047029, MP44, NUP35, NUP53
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 35 KDA NUCLEOPORIN, MITOTIC PHOSPHOPROTEIN 44, MP-44, NUCLEAR PORE COMPLEX PROTEIN NUP53, NUCLEOPORIN NUP35

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4LIR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LIR)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains d4lira_ A: automated matches                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhh.eeeee..hhhhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhh...eee...eeeeeee..hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 4lir A 171 LDDSWVTVFGFPQASASYILLQFAQYGNILKHVmSNTGNWmHIRYQSKLQARKALSKDGRIFGESImIGVKPCIDKSVmE 250
                                   180       190       200   |   210|      220       230      |240       250
                                                           204-MSE  |                       237-MSE     249-MSE
                                                                  211-MSE                                   


Chain B from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains d4lirb_ B: automated matches                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.eeeee..hhhhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhh....ee...ee.eeee..hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 4lir B 169 DHLDDSWVTVFGFPQASASYILLQFAQYGNILKHVmSNTGNWmHIRYQSKLQARKALSKDGRIFGESImIGVKPCIDKSVmESS 252
                                   178       188       198     | 208  |    218       228       238       248|   
                                                             204-MSE  |                       237-MSE     249-MSE
                                                                    211-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LIR)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (34, 34)

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