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(-) Description

Title :  CRYSTAL STRUCTURE OF A FAR UPSTREAM ELEMENT (FUSE) BINDING PROTEIN 1 (FUBP1) FROM HOMO SAPIENS AT 1.95 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg), Partnership For Biology, Partnership For T-Cell Biology (Tcell)
Date :  02 Jul 13  (Deposition) - 27 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Keywords :  Kh Domain, Pf00013, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Rna- Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology
Crystal Structure Of A Far Upstream Element (Fuse) Binding Protein 1 (Fubp1) From Homo Sapiens At 1. 95 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FAR UPSTREAM ELEMENT-BINDING PROTEIN 1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 86-174
    Gene: BC017247, FUBP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FBP, FUSE-BINDING PROTEIN 1, DNA HELICASE V, HDH V

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric Unit (2, 11)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (2, 22)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
2PO44Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN B:134 , HOH B:806 , HOH B:879BINDING SITE FOR RESIDUE PO4 B 700
2AC2SOFTWAREGLY B:116 , ARG B:117 , GLU B:120 , GLN B:121 , HOH B:872 , HOH B:883BINDING SITE FOR RESIDUE PO4 B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4LIJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4LIJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4LIJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4LIJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4LIJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains d4lija_ A: automated matches                                                SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee..hhhhhhh..hhhhhhhhhhhh.eeee........eeeeeeeehhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 4lij A  97 RSVmTEEYKVPDGmVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCmLTGTPESVQSAKRLLDQIVEKGR 171
                               |   106   |   116       126       136       146 |     156       166     
                               |       110-MSE                               148-MSE                   
                             100-MSE                                                                   


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains d4lijb_ B: automated matches                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee..hhhhhhh..hhhhhhhhhhhh.eeee........eeeeeeeehhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4lij B  96 QRSVmTEEYKVPDGmVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCmLTGTPESVQSAKRLLDQIVEKGR 171
                                |  105    |  115       125       135       145  |    155       165      
                              100-MSE   110-MSE                               148-MSE                   


Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains d4lijc_ C: automated matches                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee..hhhhhhh..hhhhhhhhhhhh.eeee........eeeeeeeehhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4lij C  95 QQRSVmTEEYKVPDGmVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCmLTGTPESVQSAKRLLDQIVEKGR 171
                                 | 104     | 114       124       134       144   |   154       164       
                               100-MSE   110-MSE                               148-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LIJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LIJ)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)

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        FUBP1_HUMAN | Q96AE4: 1j4w 2kxh

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